Basic Information
Gene Model:Bol012650
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000195_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:633 bp
Transcript Length:633 bp
Protein Length:210 aa
Strand:-
Location:Scaffold000195_P1: 434769 : 435401
Gene CDSs(1): 1-633 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 119 135 NANot foundNot found
Segsegseg 8 33 NANot foundNot found
superfamilySSF54171DNA-binding domain 30 91 8.3e-22IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 30 81 4.4e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 31 94 7e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 30 91 1.5e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
ProfileScanPS51032AP2_ERF 31 88 22.181IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SFE42e-73ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PLA63e-29A9PLA6_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=RAP2L16 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G067461e-21K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL16129(4 genes,4 taxa):Brassica oleraceaBol012650
ORTHOMCL16129(4 genes,4 taxa):Brassica rapaBra016400
ORTHOMCL16129(4 genes,4 taxa):Oryza sativaOs03t0263000-01
ORTHOMCL16129(4 genes,4 taxa):Sorghum bicolorSb01g040280.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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