Basic Information
Gene Model:Bol012616
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000195_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2580 bp
Transcript Length:1698 bp
Protein Length:565 aa
Strand:+
Location:Scaffold000195_P1: 101534 : 104113
Gene CDSs(4): 1-124 | 206-423 | 509-1056 | 1773-2580 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 3 562 9.7e-278Not foundNot found
HMMPantherPTHR11654:SF37OLIGOPEPTIDE TRANSPO 3 562 9.7e-278Not foundNot found
superfamilySSF103473MFS general substrat 1 564 6.4e-23IPR016196Major facilitator superfamily, general substrate transporter
PatternScanPS01022PTR2_1 91 115 NAIPR018456PTR2 family proton/oligopeptide symporter, conserved site
Segsegseg 537 553 NANot foundNot found
Segsegseg 484 506 NANot foundNot found
Segsegseg 272 284 NANot foundNot found
Segsegseg 226 237 NANot foundNot found
Segsegseg 195 206 NANot foundNot found
Segsegseg 105 129 NANot foundNot found
HMMPfamPF00854PTR2 102 496 3.1e-79IPR000109Oligopeptide transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9M3901e-120PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SK990.0Q9SK99_ARATH Similar to LeOPT1 [Lycopersicon esculentum] OS=Arabidopsis thaliana GN=At1g22570 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_07761601e-119K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G22540.1
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G22550.1
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G22570.1
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G72120.1
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G72125.1
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G72130.1
ORTHOMCL104(60 genes,8 taxa):Arabidopsis thalianaAT1G72140.1
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol003593
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol012616
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol023559
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol023560
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol024973
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol024974
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol034906
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol034907
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol034909
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol040082
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol040085
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol040086
ORTHOMCL104(60 genes,8 taxa):Brassica oleraceaBol041970
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra003893
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra003894
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra003896
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra003897
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra003898
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra008009
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra008011
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra011003
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra012334
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra016085
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra016375
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra024519
ORTHOMCL104(60 genes,8 taxa):Brassica rapaBra024520
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026058001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026059001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026064001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026065001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026066001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026067001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026068001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026070001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026071001
ORTHOMCL104(60 genes,8 taxa):Vitis viniferaGSVIVT01026072001
ORTHOMCL104(60 genes,8 taxa):Oryza sativaOs01t0871500-01
ORTHOMCL104(60 genes,8 taxa):Oryza sativaOs01t0871600-01
ORTHOMCL104(60 genes,8 taxa):Oryza sativaOs05t0431700-01
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0013s11100.1
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0013s11110.1
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0013s11120.1
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0013s11160.1
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0013s11170.1
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0019s10860.1
ORTHOMCL104(60 genes,8 taxa):Populus trichocarpaPOPTR_0019s10870.1
ORTHOMCL104(60 genes,8 taxa):Sorghum bicolorSb03g041190.1
ORTHOMCL104(60 genes,8 taxa):Sorghum bicolorSb03g041200.1
ORTHOMCL104(60 genes,8 taxa):Sorghum bicolorSb07g028040.1
ORTHOMCL104(60 genes,8 taxa):Sorghum bicolorSb09g021330.1
ORTHOMCL104(60 genes,8 taxa):Carica papayaevm.TU.supercontig_177.22
ORTHOMCL104(60 genes,8 taxa):Carica papayaevm.TU.supercontig_177.23
ORTHOMCL104(60 genes,8 taxa):Carica papayaevm.TU.supercontig_177.24
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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