Basic Information
Gene Model:Bol012606
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000195_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:486 bp
Transcript Length:486 bp
Protein Length:161 aa
Strand:+
Location:Scaffold000195_P1: 32755 : 33240
Gene CDSs(1): 1-486 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 79 140 21.786IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 78 143 3.6e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 79 146 1.3e-29IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 116 127 NANot foundNot found
Segsegseg 8 30 NANot foundNot found
HMMPfamPF00847AP2 78 133 2.2e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 78 143 4.9e-20IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9C9955e-44ERF70_ARATH Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=2 SV=1
TrEMBL
Best HitE_value Description
B3LFA03e-28B3LFA0_ARATH At4g27950 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5719235e-22K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24464(2 genes,2 taxa):Brassica oleraceaBol012606
ORTHOMCL24464(2 genes,2 taxa):Brassica rapaBra016367
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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