Basic Information
Gene Model:Bol012563
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000196
Sequence:
 | 
Gene Structure
Nucleotide Length:3808 bp
Transcript Length:2169 bp
Protein Length:722 aa
Strand:-
Location:C06: 9280029 : 9283836
Gene CDSs(13): 1-103 | 184-374 | 447-1330 | 1622-1769 | 1959-2034 | 2148-2270 | 2587-2677 | 2811-2895 | 2966-3121 | 3193-3249 | 3341-3439 | 3569-3681 | 3766-3808 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 390 394 NANot foundNot found
Segsegseg 425 442 NANot foundNot found
ProfileScanPS50962IAA_ARF 622 704 25.084IPR011525Aux/IAA-ARF-dimerisation
ProfileScanPS50863B3 127 229 11.702IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 114 243 1.4e-35Not foundNot found
PatternScanPS00032ANTENNAPEDIA 358 363 NAIPR001827Homeobox protein, antennapedia type, conserved site
HMMPfamPF06507Auxin_resp 215 281 5.4e-36IPR010525Auxin response factor
HMMPfamPF02362B3 126 221 3.2e-31IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q9FGV10.0ARFH_ARATH Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9H3I20.0B9H3I2_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1075891 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_15971201e-111K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL398(30 genes,8 taxa):Arabidopsis thalianaAT1G30330.2
ORTHOMCL398(30 genes,8 taxa):Arabidopsis thalianaAT5G37020.1
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol012563
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol016113
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol022542
ORTHOMCL398(30 genes,8 taxa):Brassica oleraceaBol040239
ORTHOMCL398(30 genes,8 taxa):Brassica rapaBra004125
ORTHOMCL398(30 genes,8 taxa):Brassica rapaBra010776
ORTHOMCL398(30 genes,8 taxa):Brassica rapaBra028110
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01020805001
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01021553001
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01035204001
ORTHOMCL398(30 genes,8 taxa):Vitis viniferaGSVIVT01035205001
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs02t0164900-01
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs02t0164900-02
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs04t0671900-01
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs04t0671900-02
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs04t0671900-03
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs06t0677800-01
ORTHOMCL398(30 genes,8 taxa):Oryza sativaOs12t0613700-01
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0001s36900.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0002s05590.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0004s07640.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0005s22920.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0011s09450.1
ORTHOMCL398(30 genes,8 taxa):Populus trichocarpaPOPTR_0017s01870.1
ORTHOMCL398(30 genes,8 taxa):Sorghum bicolorSb04g004430.1
ORTHOMCL398(30 genes,8 taxa):Sorghum bicolorSb06g032500.1
ORTHOMCL398(30 genes,8 taxa):Sorghum bicolorSb10g027220.1
ORTHOMCL398(30 genes,8 taxa):Carica papayaevm.TU.supercontig_17.47
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:8509549..9408852 (-)A.thalianaChr1:24248828..24928803 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:8430786..9634181 (+)B.rapaA07:16888237..17496272 (-)69
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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