Basic Information
Gene Model:Bol012523
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000196
Sequence:
 | 
Gene Structure
Nucleotide Length:1272 bp
Transcript Length:873 bp
Protein Length:290 aa
Strand:-
Location:C06: 8890550 : 8891821
Gene CDSs(5): 1-135 | 259-324 | 416-481 | 577-684 | 775-1272 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00010HLH 195 242 3.9e-07IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 175 242 11.373IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 19 28 NANot foundNot found
superfamilySSF47459HLH, helix-loop-heli 205 264 4.9e-11IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 198 247 5.2e-12IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C7071e-114BH083_ARATH Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PR928e-52A7PR92_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022384001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G013108e-14K10863APTXaprataxin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3332(13 genes,8 taxa):Arabidopsis thalianaAT5G37800.1
ORTHOMCL3332(13 genes,8 taxa):Brassica oleraceaBol012523
ORTHOMCL3332(13 genes,8 taxa):Brassica oleraceaBol045350
ORTHOMCL3332(13 genes,8 taxa):Brassica rapaBra004169
ORTHOMCL3332(13 genes,8 taxa):Brassica rapaBra019708
ORTHOMCL3332(13 genes,8 taxa):Vitis viniferaGSVIVT01030846001
ORTHOMCL3332(13 genes,8 taxa):Oryza sativaOs01t0111500-01
ORTHOMCL3332(13 genes,8 taxa):Oryza sativaOs02t0710300-01
ORTHOMCL3332(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s08770.1
ORTHOMCL3332(13 genes,8 taxa):Populus trichocarpaPOPTR_0005s14360.1
ORTHOMCL3332(13 genes,8 taxa):Sorghum bicolorSb03g008290.1
ORTHOMCL3332(13 genes,8 taxa):Sorghum bicolorSb04g030230.1
ORTHOMCL3332(13 genes,8 taxa):Carica papayaevm.TU.contig_27490.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:8509549..9408852 (-)A.thalianaChr1:24248828..24928803 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:8430786..9634181 (+)B.rapaA07:16888237..17496272 (-)69
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G664702479521424796988Chr1Subgenome_III(LF)159
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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