Basic Information
Gene Model:Bol012506
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000197
Sequence:
 | 
Gene Structure
Nucleotide Length:1361 bp
Transcript Length:1287 bp
Protein Length:428 aa
Strand:+
Location:C03: 29799298 : 29800658
Gene CDSs(2): 1-647 | 722-1361 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 248 269 NANot foundNot found
HMMPantherPTHR21736VERNALIZATION-INSENS 1 339 1.4e-127Not foundNot found
Segsegseg 82 104 NANot foundNot found
HMMPantherPTHR21736:SF13VERNALIZATION-INSENS 1 339 1.4e-127Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FIE34e-67VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q3E9U44e-95Q3E9U4_ARATH Putative uncharacterized protein At4g30200.3 OS=Arabidopsis thaliana GN=At4g30200 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24447(2 genes,2 taxa):Brassica oleraceaBol012506
ORTHOMCL24447(2 genes,2 taxa):Brassica rapaBra024456
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28915080..29835438 (+)A.thalianaChr2:7564345..8261985 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:29404190..30958019 (+)B.rapaA09:9070132..9539186 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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