Basic Information
Gene Model:Bol012480
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000197
Sequence:
 | 
Gene Structure
Nucleotide Length:861 bp
Transcript Length:861 bp
Protein Length:286 aa
Strand:+
Location:C03: 29499402 : 29500262
Gene CDSs(1): 1-861 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 263 281 NANot foundNot found
Segsegseg 51 69 NANot foundNot found
HMMSmartSM00503no description 34 152 6.8e-24IPR006011Syntaxin, N-terminal
HMMSmartSM00397no description 186 253 1.9e-11IPR000727Target SNARE coiled-coil region
Gene3DG3DSA:1.20.1050.30no description 36 246 7.5e-34Not foundNot found
HMMPfamPF05739SNARE 196 258 2.7e-17IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 38 137 5e-16IPR006011Syntaxin, N-terminal
PatternScanPS00914SYNTAXIN 197 236 NAIPR006012Syntaxin/epimorphin, conserved site
superfamilySSF47661t-snare proteins 36 246 7.4e-34IPR010989t-SNARE
ProfileScanPS50192T_SNARE 191 253 15.402IPR000727Target SNARE coiled-coil region
HMMPantherPTHR19957SYNTAXIN 32 221 1.1e-70Not foundNot found
HMMPantherPTHR19957:SF26SYNTAXIN, ARABIDOPSI 32 221 1.1e-70Not foundNot found
Coilcoilcoiled-coil 49 70 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9ZPV91e-131SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2
TrEMBL
Best HitE_value Description
A7PZ579e-92A7PZ57_VITVI Chromosome chr4 scaffold_39, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026750001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G182601e-131K08486STX1B_2_3syntaxin 1B/2/3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7563(9 genes,6 taxa):Arabidopsis thalianaAT2G18260.1
ORTHOMCL7563(9 genes,6 taxa):Brassica oleraceaBol012480
ORTHOMCL7563(9 genes,6 taxa):Brassica rapaBra024476
ORTHOMCL7563(9 genes,6 taxa):Brassica rapaBra039622
ORTHOMCL7563(9 genes,6 taxa):Vitis viniferaGSVIVT01018937001
ORTHOMCL7563(9 genes,6 taxa):Vitis viniferaGSVIVT01026367001
ORTHOMCL7563(9 genes,6 taxa):Populus trichocarpaPOPTR_0005s12330.1
ORTHOMCL7563(9 genes,6 taxa):Populus trichocarpaPOPTR_0007s13070.1
ORTHOMCL7563(9 genes,6 taxa):Carica papayaevm.TU.supercontig_6.134
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28915080..29835438 (+)A.thalianaChr2:7564345..8261985 (+)54
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28270672..29651734 (+)B.rapaA09:15470608..15993424 (-)24
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1826079422757943388Chr2Subgenome_I81
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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