Basic Information
Gene Model:Bol012465
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000197
Sequence:
 | 
Gene Structure
Nucleotide Length:2174 bp
Transcript Length:1875 bp
Protein Length:624 aa
Strand:+
Location:C03: 29362609 : 29364782
Gene CDSs(2): 1-31 | 331-2174 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.1910no description 144 616 6.7e-69Not foundNot found
Gene3DG3DSA:3.40.50.2060no description 10 139 3e-38Not foundNot found
superfamilySSF56815Sec1/munc18-like (SM 1 612 3.2e-155IPR001619Sec1-like protein
HMMPantherPTHR11679:SF2SLY1-RELATED 29 623 1.1e-296Not foundNot found
HMMPantherPTHR11679VESICLE PROTEIN SORT 29 623 1.1e-296IPR001619Sec1-like protein
Coilcoilcoiled-coil 310 331 NANot foundNot found
Segsegseg 603 623 NANot foundNot found
Segsegseg 465 481 NANot foundNot found
HMMPfamPF00995Sec1 34 603 5.1e-112IPR001619Sec1-like protein
Gene Ontology
GO TermGO TypeDescription
GO:0006904 Biological Process vesicle docking during exocytosis
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9SL480.0SLY1_ARATH SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9MYY50.0B9MYY5_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_594991 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dya:Dyak_GE259623e-23K12479VPS45vacuolar protein sorting-associated protein 45
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4634(11 genes,8 taxa):Arabidopsis thalianaAT2G17980.1
ORTHOMCL4634(11 genes,8 taxa):Brassica oleraceaBol012465
ORTHOMCL4634(11 genes,8 taxa):Brassica rapaBra024484
ORTHOMCL4634(11 genes,8 taxa):Vitis viniferaGSVIVT01023951001
ORTHOMCL4634(11 genes,8 taxa):Oryza sativaOs03t0620800-01
ORTHOMCL4634(11 genes,8 taxa):Oryza sativaOs03t0620800-02
ORTHOMCL4634(11 genes,8 taxa):Populus trichocarpaPOPTR_0004s21450.1
ORTHOMCL4634(11 genes,8 taxa):Populus trichocarpaPOPTR_0009s16690.1
ORTHOMCL4634(11 genes,8 taxa):Sorghum bicolorSb0012s004900.1
ORTHOMCL4634(11 genes,8 taxa):Sorghum bicolorSb04g038560.1
ORTHOMCL4634(11 genes,8 taxa):Carica papayaevm.TU.supercontig_20.200
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28915080..29406748 (+)A.thalianaChr4:16842188..17139635 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28724136..29374389 (+)B.rapaA10:5632817..6248193 (+)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1798078241667826597Chr2Subgenome_I81
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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