Basic Information
Gene Model:Bol012458
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C03
Scaffold:Scaffold000197
Sequence:
 | 
Gene Structure
Nucleotide Length:788 bp
Transcript Length:462 bp
Protein Length:153 aa
Strand:-
Location:C03: 29284928 : 29285715
Gene CDSs(4): 1-96 | 211-264 | 397-547 | 628-788 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13253FAMILY NOT NAMED 98 145 1.1e-08Not foundNot found
HMMPfamPF00581Rhodanese 36 140 2e-14IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 44 146 16.277IPR001763Rhodanese-like
HMMSmartSM00450no description 35 143 1e-17IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 16 146 5.3e-26IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 26 144 3.9e-22IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q391298e-24STR16_ARATH Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9MXE04e-37B9MXE0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_741223 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2955(13 genes,8 taxa):Arabidopsis thalianaAT2G17850.1
ORTHOMCL2955(13 genes,8 taxa):Arabidopsis thalianaAT5G66170.2
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol000638
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol012458
ORTHOMCL2955(13 genes,8 taxa):Brassica oleraceaBol027147
ORTHOMCL2955(13 genes,8 taxa):Brassica rapaBra012056
ORTHOMCL2955(13 genes,8 taxa):Brassica rapaBra031805
ORTHOMCL2955(13 genes,8 taxa):Vitis viniferaGSVIVT01018758001
ORTHOMCL2955(13 genes,8 taxa):Oryza sativaOs04t0249600-01
ORTHOMCL2955(13 genes,8 taxa):Oryza sativaOs04t0249600-02
ORTHOMCL2955(13 genes,8 taxa):Populus trichocarpaPOPTR_0005s11330.1
ORTHOMCL2955(13 genes,8 taxa):Sorghum bicolorSb04g000410.1
ORTHOMCL2955(13 genes,8 taxa):Carica papayaevm.TU.supercontig_6.266
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28915080..29406748 (+)A.thalianaChr4:16842188..17139635 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:28724136..29374389 (+)B.rapaA10:5632817..6248193 (+)18
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1785077600057760822Chr2Subgenome_I81
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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