Basic Information
Gene Model:Bol012315
Gene Family:U-box Gene Family
Chromosome:C07
Scaffold:Scaffold000200
Sequence:
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Gene Structure
Nucleotide Length:2201 bp
Transcript Length:1791 bp
Protein Length:596 aa
Strand:-
Location:C07: 23724580 : 23726780
Gene CDSs(4): 1-1032 | 1110-1469 | 1548-1664 | 1920-2201 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF57850RING/U-box 211 296 6.3e-11Not foundNot found
superfamilySSF48371ARM repeat 270 593 1.4e-66IPR016024Armadillo-type fold
HMMSmartSM00185no description 511 551 2.4e+02IPR000225Armadillo
HMMSmartSM00185no description 468 510 0.44IPR000225Armadillo
HMMSmartSM00185no description 427 467 0.00014IPR000225Armadillo
HMMSmartSM00185no description 386 426 94IPR000225Armadillo
HMMSmartSM00185no description 345 385 1.6e-06IPR000225Armadillo
HMMSmartSM00504no description 233 296 3.5e-28IPR003613U box domain
HMMPfamPF00514Arm 468 510 0.0059IPR000225Armadillo
HMMPfamPF00514Arm 427 467 7.5e-09IPR000225Armadillo
HMMPfamPF00514Arm 345 385 1.5e-11IPR000225Armadillo
Coilcoilcoiled-coil 127 148 NANot foundNot found
HMMPfamPF04564U-box 229 303 5.5e-23IPR003613U box domain
ProfileScanPS50176ARM_REPEAT 438 480 8.627IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 479 523 10.552IPR000225Armadillo
ProfileScanPS50176ARM_REPEAT 356 398 12.652IPR000225Armadillo
Segsegseg 317 328 NANot foundNot found
Segsegseg 51 70 NANot foundNot found
Segsegseg 165 180 NANot foundNot found
HMMPantherPTHR23315:SF8VACUOLAR PROTEIN 8-R 324 532 1.1e-13Not foundNot found
HMMPantherPTHR23315BETA CATENIN-RELATED 324 532 1.1e-13Not foundNot found
Gene3DG3DSA:1.25.10.10no description 312 591 3.4e-53IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 226 303 9.3e-27Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q8GUG90.0PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SJ370.0B9SJ37_RICCO E3 ubiquitin ligase PUB14, putative OS=Ricinus communis GN=RCOM_0842310 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
yli:YALI0E13992g3e-17K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2330(14 genes,8 taxa):Arabidopsis thalianaAT1G23030.1
ORTHOMCL2330(14 genes,8 taxa):Arabidopsis thalianaAT1G71020.1
ORTHOMCL2330(14 genes,8 taxa):Brassica oleraceaBol012315
ORTHOMCL2330(14 genes,8 taxa):Brassica oleraceaBol016165
ORTHOMCL2330(14 genes,8 taxa):Brassica oleraceaBol023511
ORTHOMCL2330(14 genes,8 taxa):Brassica rapaBra012355
ORTHOMCL2330(14 genes,8 taxa):Brassica rapaBra016165
ORTHOMCL2330(14 genes,8 taxa):Brassica rapaBra024559
ORTHOMCL2330(14 genes,8 taxa):Vitis viniferaGSVIVT01011767001
ORTHOMCL2330(14 genes,8 taxa):Oryza sativaOs02t0732200-01
ORTHOMCL2330(14 genes,8 taxa):Populus trichocarpaPOPTR_0008s12760.1
ORTHOMCL2330(14 genes,8 taxa):Populus trichocarpaPOPTR_0010s12410.1
ORTHOMCL2330(14 genes,8 taxa):Sorghum bicolorSb04g028890.1
ORTHOMCL2330(14 genes,8 taxa):Carica papayaevm.TU.supercontig_65.122
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:23337504..23992051 (-)A.thalianaChr1:7981740..8352791 (+)38
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:22319684..24221646 (+)B.rapaA09:19299139..20745241 (-)64
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2303081566468159077Chr1MF95204
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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