Basic Information
Gene Model:Bol012208
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000201
Sequence:
 | 
Gene Structure
Nucleotide Length:2815 bp
Transcript Length:1950 bp
Protein Length:649 aa
Strand:-
Location:C09: 25312566 : 25315380
Gene CDSs(8): 1-83 | 171-246 | 454-512 | 612-1129 | 1224-1384 | 1474-1677 | 1875-2103 | 2196-2815 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF07887Calmodulin_bind 93 396 2.7e-203IPR012416Calmodulin binding protein-like
Segsegseg 535 551 NANot foundNot found
Segsegseg 571 579 NANot foundNot found
Segsegseg 72 83 NANot foundNot found
Segsegseg 486 499 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9FKL60.0Q9FKL6_ARATH Calmodulin-binding protein OS=Arabidopsis thaliana GN=At5g57580 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G575800.0K02183CALMcalmodulin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL220(40 genes,8 taxa):Arabidopsis thalianaAT2G18750.1
ORTHOMCL220(40 genes,8 taxa):Arabidopsis thalianaAT2G24300.2
ORTHOMCL220(40 genes,8 taxa):Arabidopsis thalianaAT4G25800.1
ORTHOMCL220(40 genes,8 taxa):Arabidopsis thalianaAT4G31000.1
ORTHOMCL220(40 genes,8 taxa):Arabidopsis thalianaAT5G57580.1
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol012208
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol012504
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol014217
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol018035
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol029824
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol039562
ORTHOMCL220(40 genes,8 taxa):Brassica oleraceaBol041937
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra002716
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra011241
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra013921
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra020430
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra024457
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra032107
ORTHOMCL220(40 genes,8 taxa):Brassica rapaBra038552
ORTHOMCL220(40 genes,8 taxa):Vitis viniferaGSVIVT01003207001
ORTHOMCL220(40 genes,8 taxa):Vitis viniferaGSVIVT01003722001
ORTHOMCL220(40 genes,8 taxa):Vitis viniferaGSVIVT01003724001
ORTHOMCL220(40 genes,8 taxa):Vitis viniferaGSVIVT01029152001
ORTHOMCL220(40 genes,8 taxa):Oryza sativaOs02t0177800-01
ORTHOMCL220(40 genes,8 taxa):Oryza sativaOs02t0177800-02
ORTHOMCL220(40 genes,8 taxa):Oryza sativaOs02t0562300-01
ORTHOMCL220(40 genes,8 taxa):Oryza sativaOs02t0562300-02
ORTHOMCL220(40 genes,8 taxa):Oryza sativaOs04t0444200-01
ORTHOMCL220(40 genes,8 taxa):Populus trichocarpaPOPTR_0004s03510.1
ORTHOMCL220(40 genes,8 taxa):Populus trichocarpaPOPTR_0006s20210.1
ORTHOMCL220(40 genes,8 taxa):Populus trichocarpaPOPTR_0011s04300.1
ORTHOMCL220(40 genes,8 taxa):Populus trichocarpaPOPTR_0011s04310.1
ORTHOMCL220(40 genes,8 taxa):Populus trichocarpaPOPTR_0018s10340.1
ORTHOMCL220(40 genes,8 taxa):Populus trichocarpaPOPTR_0018s11950.1
ORTHOMCL220(40 genes,8 taxa):Sorghum bicolorSb04g005240.1
ORTHOMCL220(40 genes,8 taxa):Sorghum bicolorSb04g023100.1
ORTHOMCL220(40 genes,8 taxa):Sorghum bicolorSb04g023110.1
ORTHOMCL220(40 genes,8 taxa):Sorghum bicolorSb06g017740.1
ORTHOMCL220(40 genes,8 taxa):Carica papayaevm.TU.supercontig_27.116
ORTHOMCL220(40 genes,8 taxa):Carica papayaevm.TU.supercontig_46.120
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)A.thalianaChr5:23144980..24273634 (+)179
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)B.rapaA10:8333857..9765254 (-)184
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G575802331471623318125Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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