Basic Information
Gene Model:Bol012161
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000202_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1049 bp
Transcript Length:666 bp
Protein Length:221 aa
Strand:-
Location:C04: 24656711 : 24657759
Gene CDSs(5): 1-153 | 268-438 | 507-695 | 767-825 | 956-1049 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 74 95 NANot foundNot found
HMMPfamPF05008V-SNARE 41 196 3.2e-60IPR007705Vesicle transport v-SNARE
Gene3DG3DSA:1.20.5.110no description 127 191 1.6e-19Not foundNot found
Segsegseg 202 215 NANot foundNot found
HMMPantherPTHR21230VESICLE TRANSPORT V- 1 219 3.6e-93Not foundNot found
HMMPantherPTHR21230:SF3VESICLE TRANSPORT V- 1 219 3.6e-93Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9LVP91e-102VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6T7363e-92C6T736_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G395106e-99K08493VTI1vesicle transport through interaction with t-SNAREs 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24409(2 genes,2 taxa):Brassica oleraceaBol012161
ORTHOMCL24409(2 genes,2 taxa):Brassica rapaBra040987
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24020183..25641687 (-)A.thalianaChr5:15217910..16058999 (+)77
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:24497050..25809518 (+)B.rapaA07:10184605..10503937 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
SAT5G395101582144215823840Chr5Subgenome_III(LF)137
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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