Basic Information
Gene Model:Bol012075
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000203
Sequence:
 | 
Gene Structure
Nucleotide Length:1303 bp
Transcript Length:582 bp
Protein Length:193 aa
Strand:-
Location:C09: 12447375 : 12448677
Gene CDSs(5): 1-189 | 271-314 | 417-474 | 903-996 | 1107-1303 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 98 138 9.115IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
superfamilySSF52799(Phosphotyrosine pro 14 185 3.3e-26Not foundNot found
HMMPfamPF03162Y_phosphatase2 30 192 2.6e-80IPR004861Protein-tyrosine phosphatase, SIW14-like
Segsegseg 53 64 NANot foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 125 135 NAIPR016130Protein-tyrosine phosphatase, active site
Gene3DG3DSA:3.90.190.10no description 29 179 2.5e-57Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q9ZVN43e-75Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q940L55e-99Q940L5_ARATH AT4g03960/T24M8_4 OS=Arabidopsis thaliana GN=At4g03960/T24M8_4 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2765(13 genes,8 taxa):Arabidopsis thalianaAT1G05000.2
ORTHOMCL2765(13 genes,8 taxa):Arabidopsis thalianaAT4G03960.1
ORTHOMCL2765(13 genes,8 taxa):Brassica oleraceaBol012075
ORTHOMCL2765(13 genes,8 taxa):Brassica oleraceaBol013498
ORTHOMCL2765(13 genes,8 taxa):Brassica oleraceaBol040945
ORTHOMCL2765(13 genes,8 taxa):Brassica rapaBra015379
ORTHOMCL2765(13 genes,8 taxa):Brassica rapaBra029480
ORTHOMCL2765(13 genes,8 taxa):Vitis viniferaGSVIVT01030509001
ORTHOMCL2765(13 genes,8 taxa):Oryza sativaOs09t0135700-01
ORTHOMCL2765(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s00440.1
ORTHOMCL2765(13 genes,8 taxa):Populus trichocarpaPOPTR_0011s00950.1
ORTHOMCL2765(13 genes,8 taxa):Sorghum bicolorSb10g006850.1
ORTHOMCL2765(13 genes,8 taxa):Carica papayaevm.TU.supercontig_132.32
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:11758275..12656355 (+)A.thalianaChr4:11548618..11813000 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:11231312..12867288 (+)B.rapaA09:32509649..33588598 (-)86
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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