Basic Information
Gene Model:Bol011822
Gene Family:Protein Kinase Gene Families
Chromosome:Cun
Scaffold:Scaffold000206
Sequence:
 | 
Gene Structure
Nucleotide Length:4014 bp
Transcript Length:2136 bp
Protein Length:711 aa
Strand:-
Location:Scaffold000206: 116575 : 120588
Gene CDSs(16): 1-132 | 219-375 | 462-595 | 1063-1195 | 1283-1557 | 1647-1936 | 2023-2360 | 2431-2493 | 2560-2625 | 2695-2766 | 2845-2913 | 2994-3065 | 3150-3215 | 3300-3371 | 3459-3594 | 3954-4014 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.200.20no description 393 490 2.9e-16Not foundNot found
Gene3DG3DSA:1.10.510.10no description 493 695 1.3e-43Not foundNot found
Gene3DG3DSA:3.80.10.10no description 14 222 1.5e-37Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 66 591 1.7e-223Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 66 591 1.7e-223Not foundNot found
HMMPfamPF00069Pkinase 412 627 2.7e-31IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF00560LRR_1 155 177 0.0055IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 132 153 1.1IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 108 130 0.016IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 86 105 1.7IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 17 59 1.3e-10IPR013210Leucine-rich repeat, N-terminal
Segsegseg 680 691 NANot foundNot found
Segsegseg 305 315 NANot foundNot found
Segsegseg 254 303 NANot foundNot found
Segsegseg 68 78 NANot foundNot found
Segsegseg 90 101 NANot foundNot found
Segsegseg 229 253 NANot foundNot found
PatternScanPS00107PROTEIN_KINASE_ATP 418 441 NAIPR017441Protein kinase, ATP binding site
HMMSmartSM00219no description 412 684 4e-15IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 412 686 4.4e-21IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00369no description 130 152 38IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 153 177 27IPR003591Leucine-rich repeat, typical subtype
HMMSmartSM00369no description 84 112 11IPR003591Leucine-rich repeat, typical subtype
ProfileScanPS50011PROTEIN_KINASE_DOM 412 687 34.831IPR000719Protein kinase, catalytic domain
superfamilySSF52058L domain-like 14 220 6.2e-41Not foundNot found
superfamilySSF56112Protein kinase-like 382 692 1.5e-69IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9LUL40.0SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1
TrEMBL
Best HitE_value Description
B5X5830.0B5X583_ARATH At3g14350 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4134525e-64K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G53730.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT1G78980.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13062.2
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT3G13065.1
ORTHOMCL105(60 genes,8 taxa):Arabidopsis thalianaAT4G22130.1
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol005080
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010246
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol010626
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol011822
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015780
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol015781
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol028489
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035140
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol035507
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol038497
ORTHOMCL105(60 genes,8 taxa):Brassica oleraceaBol039093
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra001486
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra013591
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra021551
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra027347
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra030923
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra034709
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra035080
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039367
ORTHOMCL105(60 genes,8 taxa):Brassica rapaBra039687
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01004806001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01016654001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029461001
ORTHOMCL105(60 genes,8 taxa):Vitis viniferaGSVIVT01029462001
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0190500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs02t0468400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0183800-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs03t0397700-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs06t0634500-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs07t0618400-02
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs09t0559900-01
ORTHOMCL105(60 genes,8 taxa):Oryza sativaOs10t0389800-01
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0001s16170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0003s07130.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15160.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0007s15170.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.2
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0011s01540.3
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00330.1
ORTHOMCL105(60 genes,8 taxa):Populus trichocarpaPOPTR_0014s00340.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g024160.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g033190.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb01g045010.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g032710.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb02g039370.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g006110.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb04g017500.1
ORTHOMCL105(60 genes,8 taxa):Sorghum bicolorSb10g024830.1
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.11
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_10.7
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_152.50
ORTHOMCL105(60 genes,8 taxa):Carica papayaevm.TU.supercontig_229.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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