Basic Information
Gene Model:Bol011727
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000208
Sequence:
 | 
Gene Structure
Nucleotide Length:3182 bp
Transcript Length:2682 bp
Protein Length:893 aa
Strand:+
Location:C04: 4313776 : 4316957
Gene CDSs(2): 1-1832 | 2333-3182 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 508 841 3.2e-65IPR017442Serine/threonine-protein kinase-like domain
Segsegseg 461 473 NANot foundNot found
Segsegseg 316 344 NANot foundNot found
Segsegseg 75 88 NANot foundNot found
Segsegseg 221 233 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 508 841 45.177IPR000719Protein kinase, catalytic domain
HMMPantherPTHR22985:SF88NONPHOTOTROPIC HYPOC 479 893 2.9e-211Not foundNot found
HMMPantherPTHR22985SERINE/THREONINE PRO 479 893 2.9e-211Not foundNot found
Gene3DG3DSA:1.10.510.10no description 560 846 6.8e-57Not foundNot found
superfamilySSF56112Protein kinase-like 483 868 1.1e-82IPR011009Protein kinase-like domain
HMMSmartSM00220no description 508 841 1.2e-86IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 508 835 2.4e-07IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 629 641 NAIPR008271Serine/threonine-protein kinase, active site
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q0DCT81e-150G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SJM30.0Q9SJM3_ARATH Putative uncharacterized protein At2g36350 OS=Arabidopsis thaliana GN=At2g36350 PE=1 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G477501e-156K08286E2.7.11.-protein-serine/threonine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT2G36350.1
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT3G52890.1
ORTHOMCL801(22 genes,8 taxa):Arabidopsis thalianaAT5G03640.1
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol010042
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol011727
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol025075
ORTHOMCL801(22 genes,8 taxa):Brassica oleraceaBol036321
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra005280
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra006955
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra009522
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra019641
ORTHOMCL801(22 genes,8 taxa):Brassica rapaBra028538
ORTHOMCL801(22 genes,8 taxa):Vitis viniferaGSVIVT01031372001
ORTHOMCL801(22 genes,8 taxa):Vitis viniferaGSVIVT01033816001
ORTHOMCL801(22 genes,8 taxa):Oryza sativaOs04t0410200-00
ORTHOMCL801(22 genes,8 taxa):Oryza sativaOs12t0480200-01
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0004s19740.1
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0006s11580.1
ORTHOMCL801(22 genes,8 taxa):Populus trichocarpaPOPTR_0009s14910.1
ORTHOMCL801(22 genes,8 taxa):Sorghum bicolorSb06g015430.1
ORTHOMCL801(22 genes,8 taxa):Sorghum bicolorSb08g014350.1
ORTHOMCL801(22 genes,8 taxa):Carica papayaevm.TU.supercontig_47.74
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5616568 (+)A.thalianaChr3:19440739..20048572 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5358645 (+)B.rapaA09:10363014..11093137 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G363501523809315241923Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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