Basic Information
Gene Model:Bol011702
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000208
Sequence:
 | 
Gene Structure
Nucleotide Length:1767 bp
Transcript Length:729 bp
Protein Length:242 aa
Strand:-
Location:C04: 4028790 : 4030556
Gene CDSs(2): 1-221 | 1260-1767 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 195 209 NANot foundNot found
Segsegseg 221 231 NANot foundNot found
Segsegseg 147 153 NANot foundNot found
Segsegseg 134 145 NANot foundNot found
Segsegseg 18 28 NANot foundNot found
HMMPfamPF02362B3 38 147 1.1e-34IPR003340Transcriptional factor B3
ProfileScanPS50863B3 39 145 14.142IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 26 157 4.3e-39Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8GYJ21e-107Y2608_ARATH B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SX033e-57B9SX03_RICCO Transcription factor, putative OS=Ricinus communis GN=RCOM_1258760 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5666671e-37K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1310(18 genes,8 taxa):Arabidopsis thalianaAT2G36080.1
ORTHOMCL1310(18 genes,8 taxa):Arabidopsis thalianaAT5G06250.2
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol010920
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol011702
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol037747
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra001411
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra005301
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra005886
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra017262
ORTHOMCL1310(18 genes,8 taxa):Vitis viniferaGSVIVT01033902001
ORTHOMCL1310(18 genes,8 taxa):Oryza sativaOs11t0156000-01
ORTHOMCL1310(18 genes,8 taxa):Oryza sativaOs11t0156000-02
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.1
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.2
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.3
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0016s07540.1
ORTHOMCL1310(18 genes,8 taxa):Sorghum bicolorSb05g003450.1
ORTHOMCL1310(18 genes,8 taxa):Carica papayaevm.TU.contig_29173.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5616568 (+)A.thalianaChr3:19440739..20048572 (+)42
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3917811..5358645 (+)B.rapaA09:10363014..11093137 (+)32
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G360801514825915151575Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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