Basic Information
Gene Model:Bol011689
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C04
Scaffold:Scaffold000208
Sequence:
 | 
Gene Structure
Nucleotide Length:1449 bp
Transcript Length:921 bp
Protein Length:306 aa
Strand:-
Location:C04: 3797153 : 3798601
Gene CDSs(6): 1-345 | 407-496 | 593-675 | 789-882 | 975-1097 | 1264-1449 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10159DUAL SPECIFICITY PRO 50 292 2.4e-172Not foundNot found
HMMPantherPTHR10159:SF5PTEN-RELATED PHOSPHA 50 292 2.4e-172Not foundNot found
HMMSmartSM00195no description 59 200 4e-05IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPfamPF00782DSPc 128 200 7.2e-19IPR000340Dual specificity phosphatase, catalytic domain
ProfileScanPS50056TYR_PHOSPHATASE_2 124 192 13.390IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 59 184 17.451IPR020422Dual specificity phosphatase, subgroup, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 54 200 4e-36Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 145 155 NAIPR016130Protein-tyrosine phosphatase, active site
Gene3DG3DSA:3.90.190.10no description 54 197 1.8e-30Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
P0C0894e-26PTPM1_RAT Protein-tyrosine phosphatase mitochondrial 1 OS=Rattus norvegicus GN=Ptpmt1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZQP11e-151Q9ZQP1_ARATH Expressed protein OS=Arabidopsis thaliana GN=dsp8 PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_4099551e-74K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24342(2 genes,2 taxa):Brassica oleraceaBol011689
ORTHOMCL24342(2 genes,2 taxa):Brassica rapaBra005315
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:34509..3935188 (+)B.rapaA09:12250169..14575172 (+)89
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G356801499671314999085Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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