Basic Information
Gene Model:Bol011630
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000210
Sequence:
 | 
Gene Structure
Nucleotide Length:1590 bp
Transcript Length:1272 bp
Protein Length:423 aa
Strand:+
Location:C08: 3036166 : 3037755
Gene CDSs(5): 1-234 | 324-635 | 708-825 | 914-1137 | 1207-1590 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 41 379 1.1e-128IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 41 379 1.1e-128Not foundNot found
HMMSmartSM00332no description 41 348 8e-72IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 36 355 2.3e-60IPR001932Protein phosphatase 2C-related
Segsegseg 304 329 NANot foundNot found
HMMPfamPF00481PP2C 87 310 3.9e-36IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 54 354 4.2e-59IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LR650.0P2C01_ARATH Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RW411e-179B9RW41_RICCO Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_1175970 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434304e-36K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2262(14 genes,8 taxa):Arabidopsis thalianaAT1G03590.1
ORTHOMCL2262(14 genes,8 taxa):Arabidopsis thalianaAT4G03415.1
ORTHOMCL2262(14 genes,8 taxa):Brassica oleraceaBol011630
ORTHOMCL2262(14 genes,8 taxa):Brassica oleraceaBol032158
ORTHOMCL2262(14 genes,8 taxa):Brassica rapaBra030536
ORTHOMCL2262(14 genes,8 taxa):Brassica rapaBra033411
ORTHOMCL2262(14 genes,8 taxa):Brassica rapaBra034206
ORTHOMCL2262(14 genes,8 taxa):Vitis viniferaGSVIVT01030553001
ORTHOMCL2262(14 genes,8 taxa):Oryza sativaOs07t0566200-01
ORTHOMCL2262(14 genes,8 taxa):Oryza sativaOs07t0566200-02
ORTHOMCL2262(14 genes,8 taxa):Populus trichocarpaPOPTR_0013s14030.1
ORTHOMCL2262(14 genes,8 taxa):Populus trichocarpaPOPTR_0019s13420.1
ORTHOMCL2262(14 genes,8 taxa):Sorghum bicolorSb02g036610.1
ORTHOMCL2262(14 genes,8 taxa):Carica papayaevm.TU.supercontig_34.123
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:2372117..3045158 (-)A.thalianaChr1:880496..1537525 (+)66
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1922202..3040620 (+)B.rapaA09:69938..613733 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G03590894254896440Chr1Subgenome_II155
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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