Basic Information
Gene Model:Bol011616
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000210
Sequence:
 | 
Gene Structure
Nucleotide Length:1563 bp
Transcript Length:876 bp
Protein Length:291 aa
Strand:-
Location:C08: 2926042 : 2927604
Gene CDSs(6): 1-285 | 446-532 | 680-816 | 932-983 | 1074-1234 | 1410-1563 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00382no description 39 226 7.4e-08IPR003593ATPase, AAA+ type, core
Gene3DG3DSA:3.40.50.300no description 14 247 5.4e-25Not foundNot found
HMMPfamPF00005ABC_tran 40 225 6e-23IPR003439ABC transporter-like
HMMPantherPTHR12847ATP-BINDING CASSETTE 60 240 5.6e-57Not foundNot found
ProfileScanPS50893ABC_TRANSPORTER_2 14 249 14.413IPR003439ABC transporter-like
Segsegseg 261 265 NANot foundNot found
Segsegseg 169 182 NANot foundNot found
superfamilySSF52540P-loop containing nu 14 273 7.8e-35Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q3EDJ01e-150AB19I_ARATH ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7Q1R11e-133A7Q1R1_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028564001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G039051e-150K12608CAF16CCR4-NOT complex subunit CAF16
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7084(9 genes,8 taxa):Arabidopsis thalianaAT1G03905.1
ORTHOMCL7084(9 genes,8 taxa):Brassica oleraceaBol011616
ORTHOMCL7084(9 genes,8 taxa):Brassica rapaBra030549
ORTHOMCL7084(9 genes,8 taxa):Vitis viniferaGSVIVT01028360001
ORTHOMCL7084(9 genes,8 taxa):Oryza sativaOs02t0810300-01
ORTHOMCL7084(9 genes,8 taxa):Populus trichocarpaPOPTR_0002s03760.1
ORTHOMCL7084(9 genes,8 taxa):Populus trichocarpaPOPTR_0005s24830.1
ORTHOMCL7084(9 genes,8 taxa):Sorghum bicolorSb04g036680.1
ORTHOMCL7084(9 genes,8 taxa):Carica papayaevm.TU.supercontig_165.16
Tandem Duplication
ClusterGene Num.Gene List
Cluster_13712Bol011614 Bol011616 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:2372117..3045158 (-)A.thalianaChr1:880496..1537525 (+)66
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1428736..2959055 (+)B.rapaA10:15715817..17879701 (-)96
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G03905993400995784Chr1Subgenome_II155
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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