Basic Information
Gene Model:Bol011567
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000210
Sequence:
 | 
Gene Structure
Nucleotide Length:1100 bp
Transcript Length:660 bp
Protein Length:219 aa
Strand:+
Location:C08: 2541654 : 2542753
Gene CDSs(5): 1-190 | 387-528 | 608-728 | 815-877 | 957-1100 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50892V_SNARE 130 190 19.234IPR001388Synaptobrevin
ProfileScanPS50859LONGIN 10 114 28.340IPR010908Longin
HMMPantherPTHR21136:SF8VAMP-7 10 219 1.2e-132Not foundNot found
HMMPantherPTHR21136SNARE PROTEINS 10 219 1.2e-132Not foundNot found
Gene3DG3DSA:1.20.5.110no description 115 194 2.1e-25Not foundNot found
PatternScanPS00417SYNAPTOBREVIN 148 167 NAIPR001388Synaptobrevin
superfamilySSF64356SNARE-like 5 122 5.3e-32IPR011012Longin-like
Segsegseg 193 211 NANot foundNot found
HMMPfamPF00957Synaptobrevin 127 215 6.2e-41IPR001388Synaptobrevin
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9ZTW31e-127VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q681L91e-126Q681L9_ARATH Putative vesicle-associated membrane protein, synaptobrevin 7B OS=Arabidopsis thaliana GN=At1g04740 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G047601e-110K08511ATVAMP72vesicle-associated membrane protein 72
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15192(4 genes,3 taxa):Arabidopsis thalianaAT1G04750.1
ORTHOMCL15192(4 genes,3 taxa):Brassica oleraceaBol011567
ORTHOMCL15192(4 genes,3 taxa):Brassica oleraceaBol040922
ORTHOMCL15192(4 genes,3 taxa):Brassica rapaBra015345
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:2372117..3045158 (-)A.thalianaChr1:880496..1537525 (+)66
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:1428736..2959055 (+)B.rapaA10:15715817..17879701 (-)96
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G0475013314661333534Chr1Subgenome_II155
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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