Basic Information
Gene Model:Bol011526
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000211
Sequence:
 | 
Gene Structure
Nucleotide Length:2793 bp
Transcript Length:1890 bp
Protein Length:629 aa
Strand:+
Location:C09: 38863 : 41655
Gene CDSs(9): 1-404 | 612-825 | 906-1014 | 1101-1325 | 1419-1516 | 1596-2109 | 2277-2382 | 2476-2619 | 2718-2793 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02225PA 287 384 2.5e-14IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 47 509 9.2e-09IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 1 42 2.5e-11IPR010259Proteinase inhibitor I9, subtilisin propeptide
superfamilySSF52743Subtilisin-like 24 538 8.3e-64IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 64 504 1.3e-63IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 1 624 4.1e-257IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 1 624 4.1e-257Not foundNot found
Segsegseg 203 212 NANot foundNot found
PatternScanPS00138SUBTILASE_SER 461 471 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LLL80.0XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RDI20.0B9RDI2_RICCO Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_1613010 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ngr:NAEGRDRAFT_646732e-06K08653MBTPS1membrane-bound transcription factor site-1 protease
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT3G46840.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT3G46850.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT4G00230.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT4G15040.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G03620.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58820.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58830.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58840.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59090.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59100.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59120.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59130.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59190.1
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol001689
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol003856
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol005450
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol011526
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015497
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015517
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015518
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015519
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015521
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol016817
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol016822
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol019553
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol025945
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol040476
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra002586
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra002592
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra006728
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra006729
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra018188
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020333
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020347
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020348
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020349
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020350
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020351
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra024883
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra024884
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra036923
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra037326
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01010668001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01010670001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016439001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016442001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016443001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016445001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016446001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016447001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016448001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016449001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016451001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016452001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016455001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016456001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018437001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018438001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018442001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01019877001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024856001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024857001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024859001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024948001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027583001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027584001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027585001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01033810001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01037483001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01037485001
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0002s15330.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0003s12010.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0006s11540.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s04280.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s04290.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s14800.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20390.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20400.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20420.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20430.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0012s13960.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0014s07050.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005460.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005470.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005530.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.contig_38276.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_18.160
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_18.161
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_1887.2
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_4.194
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_4.195
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.5
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.6
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_5.46
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.57
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.58
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.70
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.71
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.73
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.74
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.76
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.77
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.79
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.80
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.83
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:17122..249074 (+)A.thalianaChr4:82445..336344 (+)33
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:17122..547605 (+)B.rapaA09:5320693..5782360 (+)82
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G002309392397454Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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