Basic Information
Gene Model:Bol011470
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000211
Sequence:
 | 
Gene Structure
Nucleotide Length:2014 bp
Transcript Length:1092 bp
Protein Length:363 aa
Strand:+
Location:C09: 338387 : 340400
Gene CDSs(12): 1-159 | 251-376 | 447-524 | 613-749 | 849-897 | 991-1039 | 1111-1274 | 1356-1397 | 1485-1565 | 1649-1735 | 1825-1872 | 1943-2014 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00338no description 245 309 8.5e-20IPR004827Basic-leucine zipper (bZIP) transcription factor
Segsegseg 74 89 NANot foundNot found
Segsegseg 162 183 NANot foundNot found
Segsegseg 327 345 NANot foundNot found
Segsegseg 15 24 NANot foundNot found
ProfileScanPS50217BZIP 247 310 12.760IPR004827Basic-leucine zipper (bZIP) transcription factor
PatternScanPS00036BZIP_BASIC 252 267 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPantherPTHR22952:SF5CYCLIC-AMP-DEPENDENT 232 291 5e-05Not foundNot found
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 232 291 5e-05Not foundNot found
Coilcoilcoiled-coil 279 314 NANot foundNot found
HMMPfamPF07777MFMR 1 183 1.6e-75IPR012900G-box binding, MFMR
HMMPfamPF00170bZIP_1 245 308 2.2e-25IPR011616bZIP transcription factor, bZIP-1
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006351 Biological Process transcription, DNA-dependent
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P427751e-134GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1
TrEMBL
Best HitE_value Description
O658870.0O65887_SINAL G-box binding protein OS=Sinapis alba PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G011201e-134K09060GBFplant G-box-binding factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18742(3 genes,3 taxa):Arabidopsis thalianaAT4G01120.1
ORTHOMCL18742(3 genes,3 taxa):Brassica oleraceaBol011470
ORTHOMCL18742(3 genes,3 taxa):Brassica rapaBra037382
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:125224..502364 (-)A.thalianaChr4:334732..625850 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:190050..568461 (+)B.rapaA10:12901960..13222716 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G01120481597484483Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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