Basic Information
Gene Model:Bol011464
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000211
Sequence:
 | 
Gene Structure
Nucleotide Length:2209 bp
Transcript Length:1371 bp
Protein Length:456 aa
Strand:-
Location:C09: 373747 : 375955
Gene CDSs(8): 1-614 | 753-855 | 945-1031 | 1245-1319 | 1411-1485 | 1564-1644 | 1723-2010 | 2162-2209 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52821Rhodanese/Cell cycle 96 247 1.3e-06IPR001763Rhodanese-like
HMMPantherPTHR11177CHITINASE 125 431 2.3e-37Not foundNot found
HMMPantherPTHR11177:SF3CHITINASE 125 431 2.3e-37Not foundNot found
Segsegseg 360 373 NANot foundNot found
Segsegseg 375 392 NANot foundNot found
Segsegseg 251 262 NANot foundNot found
Segsegseg 270 290 NANot foundNot found
Segsegseg 102 115 NANot foundNot found
Segsegseg 50 64 NANot foundNot found
Gene3DG3DSA:3.40.250.10no description 106 255 6.9e-05IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9M1580.0Y4105_ARATH Uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q0WWP10.0Q0WWP1_ARATH Putative uncharacterized protein At4g01050 OS=Arabidopsis thaliana GN=At4g01050 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5012(11 genes,8 taxa):Arabidopsis thalianaAT4G01050.1
ORTHOMCL5012(11 genes,8 taxa):Brassica oleraceaBol010783
ORTHOMCL5012(11 genes,8 taxa):Brassica oleraceaBol011464
ORTHOMCL5012(11 genes,8 taxa):Brassica rapaBra000940
ORTHOMCL5012(11 genes,8 taxa):Brassica rapaBra037389
ORTHOMCL5012(11 genes,8 taxa):Vitis viniferaGSVIVT01027075001
ORTHOMCL5012(11 genes,8 taxa):Oryza sativaOs02t0257300-00
ORTHOMCL5012(11 genes,8 taxa):Populus trichocarpaPOPTR_0002s17040.1
ORTHOMCL5012(11 genes,8 taxa):Populus trichocarpaPOPTR_0014s09220.1
ORTHOMCL5012(11 genes,8 taxa):Sorghum bicolorSb04g009380.1
ORTHOMCL5012(11 genes,8 taxa):Carica papayaevm.TU.supercontig_490.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:125224..502364 (-)A.thalianaChr4:334732..625850 (+)40
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:190050..568461 (+)B.rapaA10:12901960..13222716 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G01050455768458510Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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