Basic Information
Gene Model:Bol011443
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000211
Sequence:
 | 
Gene Structure
Nucleotide Length:2002 bp
Transcript Length:1092 bp
Protein Length:363 aa
Strand:+
Location:C09: 510303 : 512304
Gene CDSs(6): 1-175 | 256-407 | 702-1101 | 1195-1311 | 1675-1737 | 1818-2002 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 304 316 NANot foundNot found
superfamilySSF103481Multidrug resistance 225 329 8.5e-06Not foundNot found
superfamilySSF103481Multidrug resistance 44 155 6.2e-08Not foundNot found
HMMPfamPF00892DUF6 19 146 2.7e-15IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1638e-455NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M1300.0Q9M130_ARATH Putative uncharacterized protein AT4g01440 OS=Arabidopsis thaliana GN=AT4g01440 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15709(4 genes,4 taxa):Arabidopsis thalianaAT4G01440.1
ORTHOMCL15709(4 genes,4 taxa):Brassica oleraceaBol011443
ORTHOMCL15709(4 genes,4 taxa):Brassica rapaBra037413
ORTHOMCL15709(4 genes,4 taxa):Carica papayaevm.TU.supercontig_193.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:500941..1722070 (+)A.thalianaChr4:570242..1610037 (+)122
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:190050..568461 (+)B.rapaA10:12901960..13222716 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G01440596399598718Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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