Basic Information
Gene Model:Bol011442
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000211
Sequence:
 | 
Gene Structure
Nucleotide Length:1571 bp
Transcript Length:933 bp
Protein Length:310 aa
Strand:+
Location:C09: 529340 : 530910
Gene CDSs(3): 1-111 | 594-992 | 1149-1571 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00464RIBOSOMAL_L22 231 255 NAIPR018260Ribosomal protein L22/L17, conserved site
Segsegseg 156 172 NANot foundNot found
Segsegseg 180 203 NANot foundNot found
Segsegseg 86 102 NANot foundNot found
Segsegseg 41 52 NANot foundNot found
Coilcoilcoiled-coil 148 176 NANot foundNot found
Gene3DG3DSA:4.10.280.10no description 103 170 4e-07IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 90 159 12.419IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 97 176 3.4e-16IPR011598Helix-loop-helix DNA-binding
HMMPfamPF00010HLH 108 159 8.3e-16IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 113 164 1.7e-11IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0003735 Molecular Function structural constituent of ribosome
GO:0005622 Cellular Component intracellular
GO:0005634 Cellular Component nucleus
GO:0005840 Cellular Component ribosome
GO:0006412 Biological Process translation
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9M1281e-126BH057_ARATH Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GRR72e-58B9GRR7_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_409442 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002506071e-12K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2491(14 genes,6 taxa):Arabidopsis thalianaAT2G46810.1
ORTHOMCL2491(14 genes,6 taxa):Arabidopsis thalianaAT3G61950.1
ORTHOMCL2491(14 genes,6 taxa):Arabidopsis thalianaAT4G01460.1
ORTHOMCL2491(14 genes,6 taxa):Brassica oleraceaBol011442
ORTHOMCL2491(14 genes,6 taxa):Brassica oleraceaBol045681
ORTHOMCL2491(14 genes,6 taxa):Brassica rapaBra007644
ORTHOMCL2491(14 genes,6 taxa):Brassica rapaBra037414
ORTHOMCL2491(14 genes,6 taxa):Vitis viniferaGSVIVT01027446001
ORTHOMCL2491(14 genes,6 taxa):Populus trichocarpaPOPTR_0002s18100.1
ORTHOMCL2491(14 genes,6 taxa):Populus trichocarpaPOPTR_0014s10190.1
ORTHOMCL2491(14 genes,6 taxa):Populus trichocarpaPOPTR_0014s10190.2
ORTHOMCL2491(14 genes,6 taxa):Populus trichocarpaPOPTR_0014s10190.3
ORTHOMCL2491(14 genes,6 taxa):Populus trichocarpaPOPTR_0014s10190.4
ORTHOMCL2491(14 genes,6 taxa):Carica papayaevm.TU.supercontig_57.82
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:500941..1722070 (+)A.thalianaChr4:570242..1610037 (+)122
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:190050..568461 (+)B.rapaA10:12901960..13222716 (+)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G01460620759622945Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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