Basic Information
Gene Model:Bol011340
Gene Family:Not classificated
Gene Structure
Nucleotide Length:3161 bp
Transcript Length:2427 bp
Protein Length:808 aa
Location:Scaffold000212: 615847 : 619007
Gene CDSs(8): 1-29 | 165-327 | 511-739 | 826-1592 | 1684-1905 | 1985-2056 | 2138-2782 | 2862-3161 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01243CDC48: AAA family AT 27 769 1.4e-248IPR005938ATPase, AAA-type, CDC48
Gene3DG3DSA: description 654 738 3.3e-20Not foundNot found
Gene3DG3DSA: description 465 649 3.9e-64Not foundNot found
Gene3DG3DSA: description 375 461 1e-25Not foundNot found
Gene3DG3DSA: description 192 372 5.6e-60Not foundNot found
Gene3DG3DSA:3.10.330.10no description 113 189 4.6e-35Not foundNot found
Gene3DG3DSA: description 21 112 6.5e-38IPR009010Aspartate decarboxylase-like fold
Segsegseg 790 805 NANot foundNot found
Segsegseg 590 602 NANot foundNot found
HMMSmartSM00382no description 513 653 1.2e-24IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 240 376 2.8e-23IPR003593ATPase, AAA+ type, core
superfamilySSF54585Cdc48 domain 2-like 111 204 5.8e-36Not foundNot found
superfamilySSF50692ADC-like 25 110 5.2e-31IPR009010Aspartate decarboxylase-like fold
superfamilySSF52540P-loop containing nu 199 468 7.5e-71Not foundNot found
superfamilySSF52540P-loop containing nu 474 766 1.3e-79Not foundNot found
HMMPfamPF00004AAA 516 704 9.1e-102IPR003959ATPase, AAA-type, core
HMMPfamPF00004AAA 243 427 6.5e-97IPR003959ATPase, AAA-type, core
HMMPfamPF02933CDC48_2 129 195 6.9e-13IPR004201Cell division protein 48, CDC48, domain 2
HMMPfamPF02359CDC48_N 26 112 3.2e-42IPR003338ATPase, AAA-type, VAT, N-terminal
PatternScanPS00674AAA 621 639 NAIPR003960ATPase, AAA-type, conserved site
PatternScanPS00674AAA 344 362 NAIPR003960ATPase, AAA-type, conserved site
HMMPantherPTHR23077AAA-FAMILY ATPASE 173 808 0Not foundNot found
HMMPantherPTHR23077:SF18CELL DIVISION CONTRO 173 808 0Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0016787 Molecular Function hydrolase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Best HitE_value Description
Q9LZF60.0CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2
Best HitE_value Description
B9DI550.0B9DI55_ARATH AT3G09840 protein OS=Arabidopsis thaliana GN=At3g09840 PE=2 SV=1
Best HitE_valueKOEC or Symbol Description
ath:AT5G033400.0K13525VCP, CDC48transitional endoplasmic reticulum ATPase
Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL273(36 genes,8 taxa):Arabidopsis thalianaAT3G09840.1
ORTHOMCL273(36 genes,8 taxa):Arabidopsis thalianaAT3G53230.1
ORTHOMCL273(36 genes,8 taxa):Arabidopsis thalianaAT5G03340.1
ORTHOMCL273(36 genes,8 taxa):Brassica oleraceaBol005415
ORTHOMCL273(36 genes,8 taxa):Brassica oleraceaBol011340
ORTHOMCL273(36 genes,8 taxa):Brassica oleraceaBol015312
ORTHOMCL273(36 genes,8 taxa):Brassica oleraceaBol023106
ORTHOMCL273(36 genes,8 taxa):Brassica oleraceaBol025098
ORTHOMCL273(36 genes,8 taxa):Brassica oleraceaBol033939
ORTHOMCL273(36 genes,8 taxa):Brassica rapaBra001297
ORTHOMCL273(36 genes,8 taxa):Brassica rapaBra003123
ORTHOMCL273(36 genes,8 taxa):Brassica rapaBra005733
ORTHOMCL273(36 genes,8 taxa):Brassica rapaBra006978
ORTHOMCL273(36 genes,8 taxa):Brassica rapaBra029795
ORTHOMCL273(36 genes,8 taxa):Brassica rapaBra034089
ORTHOMCL273(36 genes,8 taxa):Vitis viniferaGSVIVT01007689001
ORTHOMCL273(36 genes,8 taxa):Vitis viniferaGSVIVT01025723001
ORTHOMCL273(36 genes,8 taxa):Vitis viniferaGSVIVT01031517001
ORTHOMCL273(36 genes,8 taxa):Oryza sativaOs03t0151800-01
ORTHOMCL273(36 genes,8 taxa):Oryza sativaOs03t0151800-02
ORTHOMCL273(36 genes,8 taxa):Oryza sativaOs03t0151800-03
ORTHOMCL273(36 genes,8 taxa):Oryza sativaOs08t0413000-00
ORTHOMCL273(36 genes,8 taxa):Populus trichocarpaPOPTR_0006s12740.1
ORTHOMCL273(36 genes,8 taxa):Populus trichocarpaPOPTR_0012s09000.1
ORTHOMCL273(36 genes,8 taxa):Populus trichocarpaPOPTR_0015s09220.1
ORTHOMCL273(36 genes,8 taxa):Populus trichocarpaPOPTR_0016s09280.1
ORTHOMCL273(36 genes,8 taxa):Populus trichocarpaPOPTR_0017s14340.1
ORTHOMCL273(36 genes,8 taxa):Sorghum bicolorSb01g020910.1
ORTHOMCL273(36 genes,8 taxa):Sorghum bicolorSb01g046840.1
ORTHOMCL273(36 genes,8 taxa):Sorghum bicolorSb01g047410.1
ORTHOMCL273(36 genes,8 taxa):Sorghum bicolorSb01g047440.1
ORTHOMCL273(36 genes,8 taxa):Sorghum bicolorSb07g020190.1
ORTHOMCL273(36 genes,8 taxa):Carica papayaevm.TU.supercontig_153.17
ORTHOMCL273(36 genes,8 taxa):Carica papayaevm.TU.supercontig_56.16
ORTHOMCL273(36 genes,8 taxa):Carica papayaevm.TU.supercontig_65.33
ORTHOMCL273(36 genes,8 taxa):Carica papayaevm.TU.supercontig_65.34
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.