Basic Information
Gene Model:Bol011309
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000212
Sequence:
 | 
Gene Structure
Nucleotide Length:3291 bp
Transcript Length:1938 bp
Protein Length:645 aa
Strand:-
Location:Scaffold000212: 450795 : 454085
Gene CDSs(4): 1-116 | 192-456 | 1662-1775 | 1849-3291 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 249 640 1.5e-43IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 233 634 1e-58IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 371 576 6e-19IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 241 640 6.4e-137IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 241 640 6.4e-137Not foundNot found
superfamilySSF81606Protein serine/threo 249 638 2.5e-49IPR001932Protein phosphatase 2C-related
Segsegseg 567 584 NANot foundNot found
Segsegseg 214 237 NANot foundNot found
Segsegseg 69 88 NANot foundNot found
Segsegseg 138 153 NANot foundNot found
Segsegseg 199 207 NANot foundNot found
Coilcoilcoiled-coil 369 397 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9SR240.0P2C36_ARATH Probable protein phosphatase 2C 36 OS=Arabidopsis thaliana GN=PLL3 PE=3 SV=1
TrEMBL
Best HitE_value Description
B9HPH61e-165B9HPH6_POPTR Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_723282 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dpo:Dpse_GA114381e-18K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT1G07630.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT2G28890.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT3G09400.1
ORTHOMCL626(24 genes,8 taxa):Arabidopsis thalianaAT5G02400.1
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol000589
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol008347
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol011309
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol023399
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol033926
ORTHOMCL626(24 genes,8 taxa):Brassica oleraceaBol041143
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra001308
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra009593
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra029766
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra030695
ORTHOMCL626(24 genes,8 taxa):Brassica rapaBra041012
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01024976001
ORTHOMCL626(24 genes,8 taxa):Vitis viniferaGSVIVT01034176001
ORTHOMCL626(24 genes,8 taxa):Oryza sativaOs03t0821300-01
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0001s24620.2
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0006s08520.1
ORTHOMCL626(24 genes,8 taxa):Populus trichocarpaPOPTR_0009s03590.1
ORTHOMCL626(24 genes,8 taxa):Sorghum bicolorSb01g003190.1
ORTHOMCL626(24 genes,8 taxa):Carica papayaevm.TU.supercontig_81.160
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo