Basic Information
Gene Model:Bol011288
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:Cun
Scaffold:Scaffold000212
Sequence:
 | 
Gene Structure
Nucleotide Length:4810 bp
Transcript Length:2010 bp
Protein Length:669 aa
Strand:-
Location:Scaffold000212: 347236 : 352045
Gene CDSs(16): 1-126 | 374-504 | 618-792 | 902-1000 | 1108-1215 | 1670-1807 | 1898-2060 | 2181-2230 | 2719-2841 | 3250-3459 | 3550-3681 | 3787-3849 | 3935-4018 | 4140-4291 | 4456-4582 | 4682-4810 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00195no description 122 257 0.0015IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPantherPTHR10367MRNA CAPPING ENZYME 78 669 1.1e-228Not foundNot found
ProfileScanPS50056TYR_PHOSPHATASE_2 180 249 13.374IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
HMMPfamPF01331mRNA_cap_enzyme 351 544 1.9e-171IPR001339mRNA capping enzyme
HMMPfamPF03919mRNA_cap_C 547 644 1.1e-52IPR013846mRNA capping enzyme, C-terminal
HMMPfamPF00782DSPc 184 239 2e-09IPR000340Dual specificity phosphatase, catalytic domain
Segsegseg 283 298 NANot foundNot found
Segsegseg 360 369 NANot foundNot found
Segsegseg 42 56 NANot foundNot found
HMMPIRPIRSF036958mRNA capping enzyme, 5 669 0IPR017074mRNA capping enzyme, bifunctional
PatternScanPS00383TYR_PHOSPHATASE_1 202 212 NAIPR016130Protein-tyrosine phosphatase, active site
Gene3DG3DSA:2.40.50.140no description 593 635 3.2e-06IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:3.90.190.10no description 78 289 3.9e-64Not foundNot found
superfamilySSF50249Nucleic acid-binding 547 662 8.1e-30IPR016027Nucleic acid-binding, OB-fold-like
superfamilySSF52799(Phosphotyrosine pro 82 277 9.9e-50Not foundNot found
superfamilySSF56091DNA ligase/mRNA capp 303 546 1.1e-59Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004484 Molecular Function mRNA guanylyltransferase activity
GO:0004651 Molecular Function polynucleotide 5'-phosphatase activity
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0005634 Cellular Component nucleus
GO:0006370 Biological Process mRNA capping
GO:0006397 Biological Process mRNA processing
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
O552364e-79MCE1_MOUSE mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9SS770.0Q9SS77_ARATH Putative mRNA capping enzyme, RNA guanylyltransferase OS=Arabidopsis thaliana GN=MZB10.13 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G012900.0K13917RNGTT--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT3G09100.2
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT5G01290.1
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT5G28210.1
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol005693
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol011288
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol016647
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra005691
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra009992
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra029747
ORTHOMCL2075(15 genes,8 taxa):Vitis viniferaGSVIVT01034015001
ORTHOMCL2075(15 genes,8 taxa):Oryza sativaOs12t0193200-01
ORTHOMCL2075(15 genes,8 taxa):Populus trichocarpaPOPTR_0006s09720.1
ORTHOMCL2075(15 genes,8 taxa):Populus trichocarpaPOPTR_0016s11810.1
ORTHOMCL2075(15 genes,8 taxa):Sorghum bicolorSb05g008670.1
ORTHOMCL2075(15 genes,8 taxa):Carica papayaevm.TU.supercontig_56.91
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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