Basic Information
Gene Model:Bol011271
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:Cun
Scaffold:Scaffold000212
Sequence:
 | 
Gene Structure
Nucleotide Length:744 bp
Transcript Length:651 bp
Protein Length:216 aa
Strand:+
Location:Scaffold000212: 282002 : 282745
Gene CDSs(2): 1-446 | 540-744 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52821Rhodanese/Cell cycle 26 192 1.2e-17IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 47 192 3.5e-14IPR001763Rhodanese-like
HMMSmartSM00450no description 50 181 6.5e-13IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 60 184 14.627IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q8LBR66e-94Q8LBR6_ARATH Rhodanese-like family protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9764(8 genes,8 taxa):Arabidopsis thalianaAT3G08920.1
ORTHOMCL9764(8 genes,8 taxa):Brassica oleraceaBol011271
ORTHOMCL9764(8 genes,8 taxa):Brassica rapaBra029730
ORTHOMCL9764(8 genes,8 taxa):Vitis viniferaGSVIVT01011156001
ORTHOMCL9764(8 genes,8 taxa):Oryza sativaOs03t0289400-00
ORTHOMCL9764(8 genes,8 taxa):Populus trichocarpaPOPTR_0006s10150.1
ORTHOMCL9764(8 genes,8 taxa):Sorghum bicolorSb01g038530.1
ORTHOMCL9764(8 genes,8 taxa):Carica papayaevm.TU.supercontig_4.46
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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