Basic Information
Gene Model:Bol011219
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000213
Sequence:
 | 
Gene Structure
Nucleotide Length:3800 bp
Transcript Length:1782 bp
Protein Length:593 aa
Strand:+
Location:C05: 27548002 : 27551801
Gene CDSs(4): 1-901 | 1242-1804 | 3377-3594 | 3701-3800 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 1 586 1e-26IPR016196Major facilitator superfamily, general substrate transporter
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 2 589 0Not foundNot found
HMMPantherPTHR11654:SF20NITRATE TRANSPORTER 2 589 0Not foundNot found
HMMPfamPF00854PTR2 94 506 2.4e-78IPR000109Oligopeptide transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9M8170.0PTR2X_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8LPL20.0Q8LPL2_ARATH Putative transport protein (Fragment) OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8050771e-102K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL488(27 genes,8 taxa):Arabidopsis thalianaAT1G52190.1
ORTHOMCL488(27 genes,8 taxa):Arabidopsis thalianaAT3G16180.1
ORTHOMCL488(27 genes,8 taxa):Brassica oleraceaBol000979
ORTHOMCL488(27 genes,8 taxa):Brassica oleraceaBol011219
ORTHOMCL488(27 genes,8 taxa):Brassica oleraceaBol019480
ORTHOMCL488(27 genes,8 taxa):Brassica oleraceaBol034764
ORTHOMCL488(27 genes,8 taxa):Brassica rapaBra018952
ORTHOMCL488(27 genes,8 taxa):Brassica rapaBra021168
ORTHOMCL488(27 genes,8 taxa):Brassica rapaBra027185
ORTHOMCL488(27 genes,8 taxa):Vitis viniferaGSVIVT01017052001
ORTHOMCL488(27 genes,8 taxa):Vitis viniferaGSVIVT01035643001
ORTHOMCL488(27 genes,8 taxa):Oryza sativaOs01t0761500-01
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0001s18640.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0006s25670.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0012s08940.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00440.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00450.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00460.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00470.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00470.2
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00480.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00490.1
ORTHOMCL488(27 genes,8 taxa):Populus trichocarpaPOPTR_0018s00500.1
ORTHOMCL488(27 genes,8 taxa):Sorghum bicolorSb03g035270.1
ORTHOMCL488(27 genes,8 taxa):Carica papayaevm.TU.supercontig_23.57
ORTHOMCL488(27 genes,8 taxa):Carica papayaevm.TU.supercontig_23.60
ORTHOMCL488(27 genes,8 taxa):Carica papayaevm.TU.supercontig_324.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:27311956..28176500 (+)B.rapaA06:2798192..3179428 (+)24
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1618054813255485094Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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