Basic Information
Gene Model:Bol011133
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000213
Sequence:
 | 
Gene Structure
Nucleotide Length:1383 bp
Transcript Length:870 bp
Protein Length:289 aa
Strand:-
Location:C05: 28194108 : 28195490
Gene CDSs(5): 1-48 | 330-581 | 657-933 | 1011-1165 | 1246-1383 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 40 281 4.6e-60IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 38 289 1.7e-67IPR001932Protein phosphatase 2C-related
Segsegseg 283 286 NANot foundNot found
Segsegseg 20 38 NANot foundNot found
HMMSmartSM00332no description 31 286 2.6e-77IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 33 288 1.6e-105IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 33 288 1.6e-105Not foundNot found
Gene3DG3DSA:3.60.40.10no description 19 289 2e-64IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LDA71e-155P2C39_ARATH Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HZS41e-127B9HZS4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568871 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384101e-37K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6181(10 genes,8 taxa):Arabidopsis thalianaAT3G15260.1
ORTHOMCL6181(10 genes,8 taxa):Brassica oleraceaBol011133
ORTHOMCL6181(10 genes,8 taxa):Brassica rapaBra001589
ORTHOMCL6181(10 genes,8 taxa):Brassica rapaBra027266
ORTHOMCL6181(10 genes,8 taxa):Vitis viniferaGSVIVT01014301001
ORTHOMCL6181(10 genes,8 taxa):Oryza sativaOs07t0507000-01
ORTHOMCL6181(10 genes,8 taxa):Populus trichocarpaPOPTR_0001s40860.1
ORTHOMCL6181(10 genes,8 taxa):Populus trichocarpaPOPTR_0011s11760.1
ORTHOMCL6181(10 genes,8 taxa):Sorghum bicolorSb02g034240.1
ORTHOMCL6181(10 genes,8 taxa):Carica papayaevm.TU.supercontig_80.89
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:27794702..28395975 (+)B.rapaA08:19114192..19422784 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1526051386865142644Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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