Basic Information
Gene Model:Bol011109
Gene Family:Not classificated
Chromosome:C05
Scaffold:Scaffold000213
Sequence:
 | 
Gene Structure
Nucleotide Length:4151 bp
Transcript Length:3357 bp
Protein Length:1118 aa
Strand:+
Location:C05: 28350660 : 28354810
Gene CDSs(7): 1-600 | 703-802 | 897-983 | 1108-1349 | 1487-1569 | 1825-1948 | 2031-4151 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51186GNAT 827 977 10.501IPR000182GCN5-related N-acetyltransferase
ProfileScanPS50016ZF_PHD_2 677 722 9.917IPR019787Zinc finger, PHD-finger
HMMSmartSM00249no description 721 775 4.2IPR001965Zinc finger, PHD-type
HMMSmartSM00249no description 679 720 1.8e-12IPR001965Zinc finger, PHD-type
Gene3DG3DSA:3.30.40.10no description 653 738 1.6e-15Not foundNot found
superfamilySSF55729Acyl-CoA N-acyltrans 815 960 2.6e-07IPR016181Acyl-CoA N-acyltransferase
superfamilySSF57903FYVE/PHD zinc finger 671 729 4.1e-13IPR011011Zinc finger, FYVE/PHD-type
HMMPantherPTHR13712RING FINGER-CONTAINI 678 933 3.9e-10Not foundNot found
HMMPantherPTHR13712:SF48AUTOIMMUNE REGULATOR 678 933 3.9e-10Not foundNot found
HMMPfamPF00583Acetyltransf_1 873 948 0.0088IPR000182GCN5-related N-acetyltransferase
HMMPfamPF00628PHD 679 722 6.6e-17IPR019787Zinc finger, PHD-finger
PatternScanPS01359ZF_PHD_1 680 745 NAIPR019786Zinc finger, PHD-type, conserved site
Segsegseg 519 537 NANot foundNot found
Segsegseg 1067 1085 NANot foundNot found
Segsegseg 55 76 NANot foundNot found
Segsegseg 384 396 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008080 Molecular Function N-acetyltransferase activity
GO:0008152 Biological Process metabolic process
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O439186e-11AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9LKA70.0Q9LKA7_ARATH Gb|AAC80581.1 OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
gga:4296667e-12K10603AIREautoimmune regulator
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6959(10 genes,7 taxa):Brassica oleraceaBol011109
ORTHOMCL6959(10 genes,7 taxa):Brassica rapaBra027290
ORTHOMCL6959(10 genes,7 taxa):Vitis viniferaGSVIVT01014219001
ORTHOMCL6959(10 genes,7 taxa):Oryza sativaOs04t0433900-00
ORTHOMCL6959(10 genes,7 taxa):Oryza sativaOs04t0691700-01
ORTHOMCL6959(10 genes,7 taxa):Populus trichocarpaPOPTR_0001s40340.1
ORTHOMCL6959(10 genes,7 taxa):Sorghum bicolorSb06g017030.1
ORTHOMCL6959(10 genes,7 taxa):Sorghum bicolorSb06g034065.1
ORTHOMCL6959(10 genes,7 taxa):Sorghum bicolorSb07g000645.1
ORTHOMCL6959(10 genes,7 taxa):Carica papayaevm.TU.supercontig_97.91
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:26556328..28445586 (-)A.thalianaChr3:4961806..5894446 (+)139
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:27794702..28395975 (+)B.rapaA08:19114192..19422784 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1498050399315045403Chr3Subgenome_III(LF)334
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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