Basic Information
Gene Model:Bol011092
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000214
Sequence:
 | 
Gene Structure
Nucleotide Length:951 bp
Transcript Length:756 bp
Protein Length:251 aa
Strand:+
Location:C04: 10009084 : 10010034
Gene CDSs(2): 1-306 | 502-951 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13935:SF2gb def: Achaete-scut 75 122 2.4e-05Not foundNot found
HMMPantherPTHR13935ACHAETE-SCUTE TRANSC 75 122 2.4e-05IPR015660Achaete-scute transcription factor related
Gene3DG3DSA:4.10.280.10no description 65 138 3.9e-08IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 70 122 11.373IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 70 148 7.1e-16IPR011598Helix-loop-helix DNA-binding
HMMPfamPF00010HLH 70 122 2.5e-16IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 118 139 NANot foundNot found
HMMSmartSM00353no description 75 127 7.3e-12IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9M1K11e-103ORG2_ARATH Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SV823e-61C0SV82_ARATH Putative uncharacterized protein At2g41240 (Fragment) OS=Arabidopsis thaliana GN=At2g41240 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL16113(4 genes,3 taxa):Brassica oleraceaBol011092
ORTHOMCL16113(4 genes,3 taxa):Brassica oleraceaBol011093
ORTHOMCL16113(4 genes,3 taxa):Brassica rapaBra014657
ORTHOMCL16113(4 genes,3 taxa):Sorghum bicolorSb03g046090.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_15182Bol011092 Bol011093 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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