Basic Information
Gene Model:Bol011084
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000214
Sequence:
 | 
Gene Structure
Nucleotide Length:1109 bp
Transcript Length:699 bp
Protein Length:232 aa
Strand:-
Location:C04: 9907656 : 9908764
Gene CDSs(5): 1-358 | 462-532 | 635-712 | 819-904 | 1004-1109 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR23283SENSOR HISTIDINE KIN 12 146 6.1e-15Not foundNot found
HMMSmartSM00448no description 10 137 3.1e-21IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00072Response_reg 12 133 1.1e-22IPR001789Signal transduction response regulator, receiver region
Segsegseg 160 165 NANot foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 11 141 27.137IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 4 154 6.4e-25Not foundNot found
superfamilySSF52172CheY-like 7 133 2.8e-26IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803662e-86ARR9_ARATH Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WRG31e-74Q0WRG3_ARATH Putative two-component response regulator 3 protein OS=Arabidopsis thaliana GN=At2g41310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G570403e-86K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24286(2 genes,2 taxa):Brassica oleraceaBol011084
ORTHOMCL24286(2 genes,2 taxa):Brassica rapaBra014649
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:9136474..10010034 (-)A.thalianaChr3:21084110..21471486 (+)39
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:8470673..10010034 (+)B.rapaA09:12543831..13419898 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G570402110961421111432Chr3Subgenome_I132
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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