Basic Information
Gene Model:Bol011045
Gene Family:Transcription Factor Families
Chromosome:C04
Scaffold:Scaffold000214
Sequence:
 | 
Gene Structure
Nucleotide Length:801 bp
Transcript Length:801 bp
Protein Length:266 aa
Strand:-
Location:C04: 9462341 : 9463141
Gene CDSs(1): 1-801 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00380no description 27 90 9.1e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 26 87 1.6e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 58 71 NANot foundNot found
ProfileScanPS51032AP2_ERF 27 84 23.024IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 26 87 2.9e-23IPR016177DNA-binding, integrase-type
HMMPfamPF00847AP2 26 77 1.7e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SVX51e-112DRE2F_ARATH Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1
TrEMBL
Best HitE_value Description
B9II555e-71B9II55_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB6 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_10345301e-20K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8052(9 genes,6 taxa):Arabidopsis thalianaAT3G57600.1
ORTHOMCL8052(9 genes,6 taxa):Brassica oleraceaBol011045
ORTHOMCL8052(9 genes,6 taxa):Brassica oleraceaBol045507
ORTHOMCL8052(9 genes,6 taxa):Brassica rapaBra007341
ORTHOMCL8052(9 genes,6 taxa):Brassica rapaBra014617
ORTHOMCL8052(9 genes,6 taxa):Oryza sativaOs03t0174400-00
ORTHOMCL8052(9 genes,6 taxa):Populus trichocarpaPOPTR_0006s05320.1
ORTHOMCL8052(9 genes,6 taxa):Populus trichocarpaPOPTR_0016s05360.1
ORTHOMCL8052(9 genes,6 taxa):Carica papayaevm.TU.supercontig_92.16
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:9136474..10010034 (-)A.thalianaChr3:21084110..21471486 (+)39
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:8470673..10010034 (+)B.rapaA09:12543831..13419898 (-)55
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G576002133278321333863Chr3Subgenome_I132
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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