Basic Information
Gene Model:Bol010920
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000216_P2
Sequence:
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Gene Structure
Nucleotide Length:2244 bp
Transcript Length:711 bp
Protein Length:236 aa
Strand:-
Location:C03: 20550162 : 20552405
Gene CDSs(2): 1-568 | 2102-2244 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 31 141 2.7e-34IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 19 154 2.8e-36Not foundNot found
ProfileScanPS50863B3 32 142 13.789IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8RYD34e-96Y3158_ARATH B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PP883e-50A7PP88_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021555001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002628432e-37K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1310(18 genes,8 taxa):Arabidopsis thalianaAT2G36080.1
ORTHOMCL1310(18 genes,8 taxa):Arabidopsis thalianaAT5G06250.2
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol010920
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol011702
ORTHOMCL1310(18 genes,8 taxa):Brassica oleraceaBol037747
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra001411
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra005301
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra005886
ORTHOMCL1310(18 genes,8 taxa):Brassica rapaBra017262
ORTHOMCL1310(18 genes,8 taxa):Vitis viniferaGSVIVT01033902001
ORTHOMCL1310(18 genes,8 taxa):Oryza sativaOs11t0156000-01
ORTHOMCL1310(18 genes,8 taxa):Oryza sativaOs11t0156000-02
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.1
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.2
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s22460.3
ORTHOMCL1310(18 genes,8 taxa):Populus trichocarpaPOPTR_0016s07540.1
ORTHOMCL1310(18 genes,8 taxa):Sorghum bicolorSb05g003450.1
ORTHOMCL1310(18 genes,8 taxa):Carica papayaevm.TU.contig_29173.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:20517845..21615829 (+)A.thalianaChr3:3843142..4833599 (+)103
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:20413131..21103427 (+)B.rapaA05:2022902..2523812 (-)45
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1158036489243651317Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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