Basic Information
Gene Model:Bol010916
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000216_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1838 bp
Transcript Length:1647 bp
Protein Length:548 aa
Strand:-
Location:Scaffold000216_P1: 359480 : 361317
Gene CDSs(3): 1-1380 | 1474-1683 | 1782-1838 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00854PTR2 77 481 2e-190IPR000109Oligopeptide transporter
superfamilySSF103473MFS general substrat 33 546 8.8e-23IPR016196Major facilitator superfamily, general substrate transporter
HMMPantherPTHR11654:SF37OLIGOPEPTIDE TRANSPO 29 546 0Not foundNot found
HMMPantherPTHR11654OLIGOPEPTIDE TRANSPO 29 546 0Not foundNot found
Segsegseg 407 415 NANot foundNot found
PatternScanPS01023PTR2_2 165 177 NAIPR018456PTR2 family proton/oligopeptide symporter, conserved site
PatternScanPS01022PTR2_1 66 90 NAIPR018456PTR2 family proton/oligopeptide symporter, conserved site
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006857 Biological Process oligopeptide transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
P460320.0PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1
TrEMBL
Best HitE_value Description
C7SI160.0C7SI16_THEHA Putative nitrate transporter OS=Thellungiella halophila PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_07761600.0K14638
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL127(55 genes,8 taxa):Arabidopsis thalianaAT1G62200.1
ORTHOMCL127(55 genes,8 taxa):Arabidopsis thalianaAT2G02020.1
ORTHOMCL127(55 genes,8 taxa):Arabidopsis thalianaAT2G02040.1
ORTHOMCL127(55 genes,8 taxa):Arabidopsis thalianaAT3G54140.1
ORTHOMCL127(55 genes,8 taxa):Arabidopsis thalianaAT3G54450.1
ORTHOMCL127(55 genes,8 taxa):Arabidopsis thalianaAT5G01180.1
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol001141
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol010916
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol015118
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol025178
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol031509
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol038058
ORTHOMCL127(55 genes,8 taxa):Brassica oleraceaBol041663
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra007050
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra007073
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra009631
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra014838
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra017427
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra017428
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra024838
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra026201
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra026620
ORTHOMCL127(55 genes,8 taxa):Brassica rapaBra026817
ORTHOMCL127(55 genes,8 taxa):Vitis viniferaGSVIVT01013493001
ORTHOMCL127(55 genes,8 taxa):Vitis viniferaGSVIVT01024796001
ORTHOMCL127(55 genes,8 taxa):Vitis viniferaGSVIVT01034004001
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs01t0142800-01
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs01t0142800-03
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs03t0235700-01
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs03t0719900-01
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs03t0719900-02
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs03t0719900-03
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs07t0100600-01
ORTHOMCL127(55 genes,8 taxa):Oryza sativaOs07t0100600-02
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0001s06440.1
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0001s25570.1
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0009s04710.1
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0009s04710.2
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0009s04710.3
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0009s04710.4
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0010s11050.1
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0011s12070.1
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0016s11930.1
ORTHOMCL127(55 genes,8 taxa):Populus trichocarpaPOPTR_0016s11940.1
ORTHOMCL127(55 genes,8 taxa):Sorghum bicolorSb01g009890.1
ORTHOMCL127(55 genes,8 taxa):Sorghum bicolorSb01g009900.1
ORTHOMCL127(55 genes,8 taxa):Sorghum bicolorSb01g041710.1
ORTHOMCL127(55 genes,8 taxa):Sorghum bicolorSb01g041730.1
ORTHOMCL127(55 genes,8 taxa):Sorghum bicolorSb02g000260.1
ORTHOMCL127(55 genes,8 taxa):Sorghum bicolorSb03g006420.2
ORTHOMCL127(55 genes,8 taxa):Carica papayaevm.TU.supercontig_112.58
ORTHOMCL127(55 genes,8 taxa):Carica papayaevm.TU.supercontig_271.6
ORTHOMCL127(55 genes,8 taxa):Carica papayaevm.TU.supercontig_271.8
ORTHOMCL127(55 genes,8 taxa):Carica papayaevm.TU.supercontig_56.98
ORTHOMCL127(55 genes,8 taxa):Carica papayaevm.TU.supercontig_56.99
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6912Bol010916 Bol010917 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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