Basic Information
Gene Model:Bol010908
Gene Family:Plant Defensins Gene Families
Chromosome:Cun
Scaffold:Scaffold000216_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:576 bp
Transcript Length:234 bp
Protein Length:77 aa
Strand:-
Location:Scaffold000216_P1: 233246 : 233821
Gene CDSs(2): 1-170 | 513-576 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00940GAMMA_THIONIN 31 54 NAIPR008176Gamma thionin
superfamilySSF57095Scorpion toxin-like 31 77 3.5e-14Not foundNot found
HMMPfamPF00304Gamma-thionin 31 77 6.6e-28IPR008176Gamma thionin
HMMSmartSM00505no description 32 77 2.3e-11IPR003614Knottin
Gene3DG3DSA:3.30.30.10no description 31 77 2.4e-15Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006952 Biological Process defense response
Swiss-Prot
Best HitE_value Description
Q9ZUL74e-33DEF01_ARATH Defensin-like protein 1 OS=Arabidopsis thaliana GN=PDF2.3 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q394032e-31Q39403_BRACM Protease inhibitor II OS=Brassica campestris PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24267(2 genes,2 taxa):Brassica oleraceaBol010908
ORTHOMCL24267(2 genes,2 taxa):Brassica rapaBra017421
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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