Basic Information
Gene Model:Bol010901
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000216_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2119 bp
Transcript Length:735 bp
Protein Length:244 aa
Strand:-
Location:Scaffold000216_P1: 128228 : 130346
Gene CDSs(5): 1-246 | 331-460 | 1106-1334 | 1792-1824 | 2023-2119 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00628PHD 190 240 3.9e-16IPR019787Zinc finger, PHD-finger
ProfileScanPS50016ZF_PHD_2 188 240 9.632IPR019787Zinc finger, PHD-finger
HMMSmartSM00249no description 190 238 1.9e-09IPR001965Zinc finger, PHD-type
PatternScanPS01359ZF_PHD_1 191 237 NAIPR019786Zinc finger, PHD-type, conserved site
Segsegseg 174 186 NANot foundNot found
Segsegseg 148 161 NANot foundNot found
Segsegseg 59 76 NANot foundNot found
superfamilySSF57903FYVE/PHD zinc finger 183 244 2.2e-11IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.10no description 183 240 2.9e-15Not foundNot found
HMMPantherPTHR12321CPG BINDING PROTEIN 152 241 3.2e-12Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O814883e-71Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q8LAH01e-109Q8LAH0_ARATH Putative PHD-type zinc finger protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
der:Dere_GG146751e-08K11728BPTF, E(bx)nucleosome-remodeling factor subunit BPTF
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17909(3 genes,3 taxa):Arabidopsis thalianaAT2G02470.1
ORTHOMCL17909(3 genes,3 taxa):Brassica oleraceaBol010901
ORTHOMCL17909(3 genes,3 taxa):Brassica rapaBra017415
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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