Basic Information
Gene Model:Bol010802
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000218
Sequence:
 | 
Gene Structure
Nucleotide Length:2035 bp
Transcript Length:999 bp
Protein Length:332 aa
Strand:-
Location:C03: 19219389 : 19221423
Gene CDSs(6): 1-185 | 554-616 | 757-873 | 986-1373 | 1452-1603 | 1942-2035 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 44 147 4.7e-08Not foundNot found
HMMPfamPF00892DUF6 19 146 1e-10IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 244 250 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1635e-325NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GYT01e-132Q8GYT0_ARATH Putative uncharacterized protein At4g01450/F11O4_14 OS=Arabidopsis thaliana GN=At4g01450/F11O4_14 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_17102Bol010800 Bol010802 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19058689..19618454 (+)B.rapaA10:12950191..13419552 (-)12
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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