Basic Information
Gene Model:Bol010744
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000218
Sequence:
 | 
Gene Structure
Nucleotide Length:588 bp
Transcript Length:588 bp
Protein Length:195 aa
Strand:+
Location:C03: 19644297 : 19644884
Gene CDSs(1): 1-588 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00353no description 121 170 7.4e-12IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 118 165 0.00034IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 108 189 7.1e-11IPR011598Helix-loop-helix DNA-binding
HMMPantherPTHR12565STEROL REGULATORY EL 123 165 2.1e-06Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 123 165 2.1e-06Not foundNot found
ProfileScanPS50888HLH 109 165 11.324IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 125 140 NANot foundNot found
Segsegseg 66 88 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
O813136e-64IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3
TrEMBL
Best HitE_value Description
C5IFL18e-57C5IFL1_LEPCM INDEHISCENT OS=Lepidium campestre GN=IND PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G013101e-15K10863APTXaprataxin
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3177(13 genes,8 taxa):Arabidopsis thalianaAT4G00120.1
ORTHOMCL3177(13 genes,8 taxa):Arabidopsis thalianaAT5G09750.1
ORTHOMCL3177(13 genes,8 taxa):Brassica oleraceaBol010744
ORTHOMCL3177(13 genes,8 taxa):Brassica oleraceaBol024622
ORTHOMCL3177(13 genes,8 taxa):Brassica rapaBra000979
ORTHOMCL3177(13 genes,8 taxa):Brassica rapaBra028620
ORTHOMCL3177(13 genes,8 taxa):Vitis viniferaGSVIVT01026516001
ORTHOMCL3177(13 genes,8 taxa):Oryza sativaOs08t0108500-01
ORTHOMCL3177(13 genes,8 taxa):Populus trichocarpaPOPTR_0005s06220.1
ORTHOMCL3177(13 genes,8 taxa):Populus trichocarpaPOPTR_0007s03950.1
ORTHOMCL3177(13 genes,8 taxa):Sorghum bicolorSb07g000900.1
ORTHOMCL3177(13 genes,8 taxa):Sorghum bicolorSb07g000910.1
ORTHOMCL3177(13 genes,8 taxa):Carica papayaevm.TU.contig_46440.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19490917..19668133 (-)A.thalianaChr4:17792..333477 (+)24
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:17185827..20062578 (+)B.rapaA03:16770154..18407426 (+)246
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G001204166543197Chr4Subgenome_I143
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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