Basic Information
Gene Model:Bol010714
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C03
Scaffold:Scaffold000218
Sequence:
 | 
Gene Structure
Nucleotide Length:2652 bp
Transcript Length:1746 bp
Protein Length:581 aa
Strand:+
Location:C03: 19784738 : 19787389
Gene CDSs(10): 1-120 | 238-382 | 522-634 | 760-865 | 939-1154 | 1273-1394 | 1485-1553 | 1636-2098 | 2180-2292 | 2374-2652 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.90.190.10no description 255 421 4e-25Not foundNot found
Segsegseg 23 39 NANot foundNot found
Segsegseg 112 120 NANot foundNot found
Segsegseg 356 373 NANot foundNot found
HMMPantherPTHR10159DUAL SPECIFICITY PRO 283 411 6.4e-09Not foundNot found
HMMSmartSM00195no description 282 432 0.00047IPR020422Dual specificity phosphatase, subgroup, catalytic domain
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 282 411 17.568IPR020422Dual specificity phosphatase, subgroup, catalytic domain
HMMPfamPF00782DSPc 282 424 1.1e-07IPR000340Dual specificity phosphatase, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 280 415 2.6e-22Not foundNot found
superfamilySSF50156PDZ domain-like 63 152 6.3e-06IPR001478PDZ/DHR/GLGF
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
Swiss-Prot
Best HitE_value Description
Q91XQ21e-08EPM2A_RAT Laforin (Fragment) OS=Rattus norvegicus GN=Epm2a PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8LCU30.0Q8LCU3_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cme:CMT465C1e-13K14165K14165--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9707(8 genes,7 taxa):Arabidopsis thalianaAT3G01510.1
ORTHOMCL9707(8 genes,7 taxa):Brassica oleraceaBol010714
ORTHOMCL9707(8 genes,7 taxa):Vitis viniferaGSVIVT01032464001
ORTHOMCL9707(8 genes,7 taxa):Oryza sativaOs08t0379300-01
ORTHOMCL9707(8 genes,7 taxa):Populus trichocarpaPOPTR_0001s34940.1
ORTHOMCL9707(8 genes,7 taxa):Populus trichocarpaPOPTR_0001s34940.2
ORTHOMCL9707(8 genes,7 taxa):Sorghum bicolorSb07g019250.1
ORTHOMCL9707(8 genes,7 taxa):Carica papayaevm.TU.supercontig_215.10
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19761945..20062578 (+)A.thalianaChr5:4950411..5245820 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19743543..20061086 (+)B.rapaA10:452697..934718 (-)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G01510198679201742Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo