Basic Information
Gene Model:Bol010697
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000218
Sequence:
 | 
Gene Structure
Nucleotide Length:2629 bp
Transcript Length:2334 bp
Protein Length:777 aa
Strand:+
Location:C03: 19873239 : 19875867
Gene CDSs(3): 1-1223 | 1306-1431 | 1645-2629 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 751 763 NANot foundNot found
Segsegseg 722 731 NANot foundNot found
Segsegseg 593 604 NANot foundNot found
Segsegseg 525 534 NANot foundNot found
Segsegseg 392 407 NANot foundNot found
Segsegseg 145 158 NANot foundNot found
Segsegseg 9 18 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 442 725 37.672IPR000719Protein kinase, catalytic domain
HMMPfamPF00069Pkinase 442 713 2.9e-46IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF08488WAK 197 301 2.1e-47IPR013695Wall-associated kinase
Gene3DG3DSA:3.30.200.20no description 423 517 2.3e-25Not foundNot found
Gene3DG3DSA:1.10.510.10no description 520 724 9.1e-50Not foundNot found
HMMSmartSM00220no description 442 719 1.7e-35IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 442 713 1.8e-27IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
PatternScanPS01187EGF_CA 329 360 NAIPR018097EGF-like calcium-binding, conserved site
PatternScanPS00108PROTEIN_KINASE_ST 564 576 NAIPR008271Serine/threonine-protein kinase, active site
superfamilySSF56112Protein kinase-like 427 733 5.2e-81IPR011009Protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 311 718 7.2e-228Not foundNot found
HMMPantherPTHR23258:SF444WALL-ASSOCIATED PROT 311 718 7.2e-228Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005509 Molecular Function calcium ion binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q8VYA30.0WAKLJ_ARATH Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GLQ21e-180B9GLQ2_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_846161 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G594207e-55K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16110.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16120.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16130.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16150.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16160.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G16260.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G17910.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G19390.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G69730.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G79670.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT1G79680.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT4G31100.1
ORTHOMCL72(75 genes,6 taxa):Arabidopsis thalianaAT4G31110.1
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009838
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009839
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol009840
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol010697
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol011559
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018028
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018030
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol018031
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol021492
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol021493
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol026855
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol029330
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol033707
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol038554
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol038555
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol040524
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol040525
ORTHOMCL72(75 genes,6 taxa):Brassica oleraceaBol045915
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra003598
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra011245
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra011247
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra015361
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra016370
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra024026
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra025736
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra026731
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra026732
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra030595
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra030596
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra031078
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra031079
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra035134
ORTHOMCL72(75 genes,6 taxa):Brassica rapaBra035135
ORTHOMCL72(75 genes,6 taxa):Vitis viniferaGSVIVT01008212001
ORTHOMCL72(75 genes,6 taxa):Vitis viniferaGSVIVT01008432001
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03190.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03210.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s03240.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07540.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07550.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07620.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07630.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0001s07650.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18410.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18440.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18470.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18480.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18490.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0003s18500.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0004s20370.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0018s14500.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0018s14510.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0075s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0075s00210.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00220.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0112s00230.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0126s00200.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0126s00240.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_0316s00220.1
ORTHOMCL72(75 genes,6 taxa):Populus trichocarpaPOPTR_1809s00200.1
ORTHOMCL72(75 genes,6 taxa):Carica papayaevm.TU.supercontig_106.105
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19761945..20062578 (+)A.thalianaChr5:4950411..5245820 (+)17
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19743543..20061086 (+)B.rapaA10:452697..934718 (-)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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