Basic Information
Gene Model:Bol010665
Gene Family:14-3-3 Gene Family
Chromosome:C03
Scaffold:Scaffold000218
Sequence:
 | 
Gene Structure
Nucleotide Length:1056 bp
Transcript Length:786 bp
Protein Length:261 aa
Strand:-
Location:C03: 20061523 : 20062578
Gene CDSs(4): 1-477 | 567-689 | 759-875 | 988-1056 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.190.20no description 3 251 8.4e-107IPR00030814-3-3 protein
HMMPfamPF0024414-3-3 5 242 1.7e-149IPR00030814-3-3 protein
Coilcoilcoiled-coil 11 32 NANot foundNot found
PatternScanPS007971433_2 217 236 NAIPR00030814-3-3 protein
PatternScanPS007961433_1 45 55 NAIPR00030814-3-3 protein
HMMPantherPTHR1886014-3-3 2 256 2.4e-207IPR00030814-3-3 protein
HMMPIRPIRSF00086814-3-3 protein 3 248 4.5e-181IPR00030814-3-3 protein
superfamilySSF4844514-3-3 protein 2 237 5.9e-106IPR00030814-3-3 protein
HMMSmartSM00101no description 5 249 8.4e-209IPR00030814-3-3 protein
Gene Ontology
GO TermGO TypeDescription
GO:0019904 Molecular Function protein domain specific binding
Swiss-Prot
Best HitE_value Description
Q963001e-14114337_ARATH 14-3-3-like protein GF14 nu OS=Arabidopsis thaliana GN=GRF7 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q1KUM91e-132Q1KUM9_9ROSI Putative uncharacterized protein OS=Cleome spinosa PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5807821e-130K06630YWHAtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24234(2 genes,2 taxa):Brassica oleraceaBol010665
ORTHOMCL24234(2 genes,2 taxa):Brassica rapaBra001049
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:19879038..20170473 (+)A.thalianaChr3:326397..570103 (+)20
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G02520526437528313Chr3Subgenome_II468
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo