Basic Information
Gene Model:Bol010662
Gene Family:Protein Kinase Gene Families
Chromosome:C03
Scaffold:Scaffold000219
Sequence:
 | 
Gene Structure
Nucleotide Length:1704 bp
Transcript Length:1041 bp
Protein Length:346 aa
Strand:+
Location:C03: 51577727 : 51579430
Gene CDSs(6): 1-28 | 348-472 | 575-782 | 853-1090 | 1186-1333 | 1411-1704 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 35 233 2.2e-47IPR017442Serine/threonine-protein kinase-like domain
HMMSmartSM00219no description 35 304 8e-33IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 35 304 1e-32IPR002290Serine/threonine-protein kinase domain
ProfileScanPS50011PROTEIN_KINASE_DOM 35 309 36.273IPR000719Protein kinase, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 155 167 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 41 62 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.10no description 112 306 1.1e-51Not foundNot found
Gene3DG3DSA:3.30.200.20no description 16 109 9.5e-24Not foundNot found
superfamilySSF56112Protein kinase-like 5 312 4.5e-83IPR011009Protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 9 346 1.6e-237Not foundNot found
HMMPantherPTHR23258:SF430SERINE/THREONINE REC 9 346 1.6e-237Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q8GYA41e-144CRK10_ARATH Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=2
TrEMBL
Best HitE_value Description
C6ZRN51e-132C6ZRN5_SOYBN Cysteine-rich protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_10787601e-60K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_1613Bol010662 Bol010663 Bol010664 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:49975615..51582771 (+)A.thalianaChr4:11488976..12136157 (+)37
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:50508072..51582771 (+)B.rapaA03:7193963..8008535 (-)21
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G231801213813712140921Chr4Subgenome_II220
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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