Basic Information
Gene Model:Bol010642
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000219
Sequence:
 | 
Gene Structure
Nucleotide Length:1101 bp
Transcript Length:366 bp
Protein Length:121 aa
Strand:-
Location:C03: 51043860 : 51044960
Gene CDSs(5): 1-54 | 160-218 | 325-474 | 580-672 | 1092-1101 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.2020no description 1 117 2.5e-37Not foundNot found
superfamilySSF53271PRTase-like 1 117 4.4e-41Not foundNot found
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 61 97 0.00096Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 61 97 0.00096Not foundNot found
Segsegseg 26 34 NANot foundNot found
HMMPfamPF00156Pribosyltran 4 98 3.2e-32IPR000836Phosphoribosyltransferase
Gene Ontology
GO TermGO TypeDescription
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
Q431996e-46APT1_WHEAT Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SUW21e-59Q9SUW2_ARATH Adenine phosphoribosyltransferase (EC 2.4.2.7)-like protein OS=Arabidopsis thaliana GN=AT4g22570 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G225701e-60K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:50556594..51195207 (-)A.thalianaChr4:7307737..7519422 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:49657081..51579430 (+)B.rapaA08:9489694..10333266 (-)73
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G225701188212611885421Chr4Subgenome_II220
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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