Basic Information
Gene Model:Bol010604
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000220
Sequence:
 | 
Gene Structure
Nucleotide Length:1677 bp
Transcript Length:1086 bp
Protein Length:361 aa
Strand:-
Location:Scaffold000220: 750999 : 752675
Gene CDSs(3): 1-762 | 1221-1397 | 1531-1677 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 71 320 2.2e-82IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 106 114 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMPantherPTHR13832PROTEIN PHOSPHATASE 63 349 1.1e-164IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF92PROTEIN PHOSPHATASE 63 349 1.1e-164Not foundNot found
Gene3DG3DSA:3.60.40.10no description 69 331 4.9e-73IPR001932Protein phosphatase 2C-related
Segsegseg 248 270 NANot foundNot found
Segsegseg 123 130 NANot foundNot found
superfamilySSF81606Protein serine/threo 69 328 1.4e-75IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 62 325 3.2e-85IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 87 327 0.0066IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9SD020.0P2C47_ARATH Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9S6W21e-154B9S6W2_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0874960 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43414331e-91K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8005(9 genes,6 taxa):Arabidopsis thalianaAT3G51470.1
ORTHOMCL8005(9 genes,6 taxa):Brassica oleraceaBol010604
ORTHOMCL8005(9 genes,6 taxa):Brassica oleraceaBol014763
ORTHOMCL8005(9 genes,6 taxa):Brassica rapaBra036796
ORTHOMCL8005(9 genes,6 taxa):Brassica rapaBra038901
ORTHOMCL8005(9 genes,6 taxa):Vitis viniferaGSVIVT01022296001
ORTHOMCL8005(9 genes,6 taxa):Populus trichocarpaPOPTR_0005s10550.1
ORTHOMCL8005(9 genes,6 taxa):Populus trichocarpaPOPTR_0007s09470.1
ORTHOMCL8005(9 genes,6 taxa):Carica papayaevm.TU.supercontig_6.352
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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