Basic Information
Gene Model:Bol010509
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000221_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1393 bp
Transcript Length:1134 bp
Protein Length:377 aa
Strand:-
Location:Scaffold000221_P2: 31971 : 33363
Gene CDSs(4): 1-225 | 315-551 | 653-1020 | 1090-1393 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 16 22 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 72 354 7.2e-58IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 31 375 1e-169IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 31 375 1e-169Not foundNot found
superfamilySSF81606Protein serine/threo 20 351 8.3e-58IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 76 322 7e-31IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 76 84 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 36 348 3.6e-76IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9SD120.0P2C46_ARATH Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S2S50.0Q8S2S5_THEHA Protein phosphatase 2c-like protein OS=Thellungiella halophila PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009429705e-25K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL556(26 genes,8 taxa):Arabidopsis thalianaAT3G51370.1
ORTHOMCL556(26 genes,8 taxa):Arabidopsis thalianaAT4G38520.1
ORTHOMCL556(26 genes,8 taxa):Arabidopsis thalianaAT5G66080.1
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol000911
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol010509
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol010597
ORTHOMCL556(26 genes,8 taxa):Brassica oleraceaBol016073
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra010741
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra033566
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra036813
ORTHOMCL556(26 genes,8 taxa):Brassica rapaBra038895
ORTHOMCL556(26 genes,8 taxa):Vitis viniferaGSVIVT01023994001
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs03t0137200-01
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs06t0717800-01
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs06t0717800-02
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs06t0717800-03
ORTHOMCL556(26 genes,8 taxa):Oryza sativaOs10t0544900-01
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0004s18340.1
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0005s11030.1
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0007s09220.1
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0007s09220.2
ORTHOMCL556(26 genes,8 taxa):Populus trichocarpaPOPTR_0009s13950.1
ORTHOMCL556(26 genes,8 taxa):Sorghum bicolorSb01g030180.1
ORTHOMCL556(26 genes,8 taxa):Sorghum bicolorSb01g047830.1
ORTHOMCL556(26 genes,8 taxa):Sorghum bicolorSb10g030320.1
ORTHOMCL556(26 genes,8 taxa):Carica papayaevm.TU.supercontig_20.108
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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