Basic Information
Gene Model:Bol010484
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000221_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1375 bp
Transcript Length:1176 bp
Protein Length:391 aa
Strand:+
Location:C02: 11762083 : 11763457
Gene CDSs(4): 1-258 | 326-487 | 557-727 | 791-1375 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 58 388 3.4e-107IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 58 388 3.4e-107Not foundNot found
PatternScanPS01032PP2C 88 96 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 42 384 5e-79IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 56 279 3.9e-65IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 58 390 1.9e-73IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 36 391 9.9e-75IPR001932Protein phosphatase 2C-related
Segsegseg 351 364 NANot foundNot found
Segsegseg 12 23 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9FXE41e-153P2C14_ARATH Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9HTS01e-123B9HTS0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1089844 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384101e-58K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12643(6 genes,6 taxa):Arabidopsis thalianaAT1G67820.1
ORTHOMCL12643(6 genes,6 taxa):Brassica oleraceaBol010484
ORTHOMCL12643(6 genes,6 taxa):Brassica rapaBra033976
ORTHOMCL12643(6 genes,6 taxa):Vitis viniferaGSVIVT01000543001
ORTHOMCL12643(6 genes,6 taxa):Populus trichocarpaPOPTR_0010s05760.1
ORTHOMCL12643(6 genes,6 taxa):Carica papayaevm.TU.supercontig_33.39
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12267878 (+)A.thalianaChr1:25276294..25561212 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12835805 (+)B.rapaA07:4956496..5424555 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G678202542985325431564Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo