Basic Information
Gene Model:Bol010460
Gene Family:U-box Gene Family
Chromosome:C02
Scaffold:Scaffold000221_P1
Sequence:
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Gene Structure
Nucleotide Length:3383 bp
Transcript Length:2358 bp
Protein Length:785 aa
Strand:+
Location:C02: 11448388 : 11451770
Gene CDSs(5): 1-51 | 187-372 | 501-608 | 766-1928 | 2534-3383 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22849WDSAM1 PROTEIN 276 356 4.4e-10Not foundNot found
superfamilySSF57850RING/U-box 258 344 6.1e-13Not foundNot found
superfamilySSF48371ARM repeat 315 707 3.8e-46IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.10no description 415 686 3.8e-32IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 271 348 6.2e-26Not foundNot found
Segsegseg 401 418 NANot foundNot found
HMMSmartSM00185no description 540 581 8.6IPR000225Armadillo
HMMSmartSM00185no description 624 665 1.7e+02IPR000225Armadillo
HMMSmartSM00185no description 501 539 1e+02IPR000225Armadillo
HMMSmartSM00504no description 278 341 2.4e-34IPR003613U box domain
HMMSmartSM00185no description 455 499 8.2IPR000225Armadillo
HMMPfamPF04564U-box 276 348 4.4e-28IPR003613U box domain
ProfileScanPS50176ARM_REPEAT 466 512 8.907IPR000225Armadillo
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9CAG50.0PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9HT950.0B9HT95_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_726064 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_178791e-06K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1103(19 genes,8 taxa):Arabidopsis thalianaAT1G24330.1
ORTHOMCL1103(19 genes,8 taxa):Arabidopsis thalianaAT1G27910.1
ORTHOMCL1103(19 genes,8 taxa):Arabidopsis thalianaAT1G67530.1
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol002093
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol005289
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol008441
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol010460
ORTHOMCL1103(19 genes,8 taxa):Brassica oleraceaBol041756
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra010914
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra010960
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra030028
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra032852
ORTHOMCL1103(19 genes,8 taxa):Brassica rapaBra033994
ORTHOMCL1103(19 genes,8 taxa):Vitis viniferaGSVIVT01010374001
ORTHOMCL1103(19 genes,8 taxa):Oryza sativaOs01t0901000-01
ORTHOMCL1103(19 genes,8 taxa):Populus trichocarpaPOPTR_0008s17710.1
ORTHOMCL1103(19 genes,8 taxa):Populus trichocarpaPOPTR_0010s06810.1
ORTHOMCL1103(19 genes,8 taxa):Sorghum bicolorSb03g042880.1
ORTHOMCL1103(19 genes,8 taxa):Carica papayaevm.TU.supercontig_43.21
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12267878 (+)A.thalianaChr1:25276294..25561212 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:11418207..12835805 (+)B.rapaA07:4956496..5424555 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G675302530765825311308Chr1Subgenome_I379
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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